Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.0e-166 590.1 315 100.0
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.3e-128 461.5 310 83.9
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.5e-69 266.5 312 52.6
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.8e-68 262.3 258 58.5
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.2e-66 257.7 314 50.6
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.2e-65 253.4 220 63.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 3.8e-65 252.7 323 50.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.4e-64 250.8 338 49.4
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.2e-63 247.7 214 63.1
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 4.6e-63 245.7 204 63.7
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.6e-63 245.7 225 60.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 4.6e-63 245.7 327 48.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 6.0e-63 245.4 322 49.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 7.9e-63 245.0 300 49.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.0e-62 243.0 292 51.0
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.9e-62 242.7 209 63.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.9e-62 242.7 225 61.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 6.7e-62 241.9 256 56.2
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-61 241.1 225 59.1
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.5e-61 240.7 206 64.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.3e-61 239.6 215 62.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.3e-61 239.2 225 60.4
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 8.1e-60 235.0 214 61.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.1e-59 234.6 241 57.7
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.8e-59 233.8 289 49.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.8e-59 233.8 321 47.4
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.4e-59 233.4 210 61.9
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.4e-59 233.4 274 53.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.4e-59 233.4 305 48.5
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 3.1e-59 233.0 329 47.7
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 9.0e-59 231.5 259 56.0
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 9.0e-59 231.5 212 62.7
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.2e-58 231.1 353 43.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.4e-58 229.6 215 60.5
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.4e-58 229.6 212 62.3
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 4.5e-58 229.2 322 45.3
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 4.5e-58 229.2 221 59.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 7.6e-58 228.4 265 51.3
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.7e-57 227.3 314 46.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.9e-57 226.5 326 46.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.9e-57 225.7 211 58.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 8.4e-57 224.9 317 47.6
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.4e-56 224.2 295 48.1
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.2e-56 223.0 316 46.8
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 5.5e-56 222.2 210 59.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 7.1e-56 221.9 305 47.9
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 7.1e-56 221.9 251 52.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.6e-55 220.7 284 47.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.6e-55 220.7 218 57.8
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.6e-55 220.7 321 44.5
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 2.7e-55 219.9 206 57.8
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 3.5e-55 219.5 279 48.7
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 6.0e-55 218.8 305 47.5
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 7.9e-55 218.4 287 49.5
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 7.9e-55 218.4 222 57.2
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.0e-54 218.0 211 58.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.3e-54 216.9 329 42.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.0e-54 216.5 222 55.4
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.0e-54 216.5 222 55.4
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 8.7e-54 214.9 269 48.3
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.9e-53 213.8 250 50.8
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.5e-53 213.4 272 48.9
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 9.6e-53 211.5 328 45.7
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.1e-52 210.3 315 44.8
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.1e-51 208.0 241 51.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.1e-51 208.0 223 52.9
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.1e-51 208.0 291 44.0
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 4.0e-51 206.1 222 54.1
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 6.9e-51 205.3 211 54.5
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-50 204.5 157 66.2
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.5e-50 204.1 304 46.7
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.5e-50 204.1 220 52.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 3.4e-50 203.0 225 53.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.5e-50 202.6 316 42.4
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 4.5e-50 202.6 202 55.0
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.0e-49 201.4 224 50.9
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.0e-49 201.4 224 50.9
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.7e-49 200.7 265 46.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.7e-49 200.7 224 50.0
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.2e-49 200.3 224 53.1
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 2.9e-49 199.9 277 46.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 5.5e-48 195.7 315 42.2
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.0e-46 189.9 225 48.4
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.7e-45 184.9 209 54.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.7e-44 183.0 188 57.4
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.4e-43 180.3 221 52.5
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 9.0e-43 178.3 261 47.1
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.6e-42 176.8 130 63.8
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 7.6e-42 175.3 520 31.5
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.9e-41 173.3 247 49.0
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.6e-39 167.5 260 43.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 7.9e-39 165.2 290 40.7
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 1.4e-38 164.5 327 36.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 6.7e-38 162.2 167 50.9
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 3.3e-37 159.8 157 52.9
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 4.3e-37 159.5 157 52.2
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.3e-37 159.5 152 59.9
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 7.4e-37 158.7 277 39.0
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.7e-36 157.5 270 39.6
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 4.8e-36 156.0 157 51.6
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.8e-36 156.0 157 51.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.1e-35 153.3 292 37.7
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.1e-35 153.3 206 46.1
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-34 151.4 207 44.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.0e-34 150.6 238 46.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 2.1e-31 140.6 285 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.0e-30 138.3 160 48.1
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.4e-30 137.9 150 56.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.3e-30 137.1 282 40.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.5e-29 134.4 226 38.1
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.3e-28 131.3 132 50.0
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 5.3e-27 125.9 109 56.9
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 6.5e-25 119.0 119 51.3
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 7.2e-24 115.5 233 39.1
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.1e-23 114.0 109 53.2
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.7e-23 113.6 232 40.5
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.4e-22 111.3 164 45.7
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.8e-22 110.9 193 38.9
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-20 104.8 81 67.9
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.1e-19 101.7 77 63.6
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.8e-19 100.9 168 43.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 7.2e-16 89.0 89 50.6
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.2e-15 88.2 63 66.7
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 5.2e-14 82.8 105 43.8
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.3e-13 80.1 155 36.1
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 7.5e-13 79.0 117 39.3
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.4e-11 74.7 193 33.2
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.4e-11 73.9 200 33.0
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 9.1e-11 72.0 193 32.6
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.2e-10 71.6 45 68.9
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.5e-10 70.1 68 52.9
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 2.2e-09 67.4 55 60.0
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.5e-08 63.9 86 40.7
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 9.4e-08 62.0 98 49.0
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.2e-07 61.6 52 55.8
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.2e-07 61.6 84 40.5
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.7e-07 60.5 106 43.4
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 2.7e-07 60.5 84 39.3
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.6e-07 60.1 84 38.1
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 6.1e-07 59.3 56 53.6
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.8e-06 57.8 193 30.6
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 8.8e-06 55.5 55 47.3


User provided reference genes

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