Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.2e-220 768.8 449 100.0
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.2e-127 459.9 500 59.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 9.3e-126 454.5 457 62.8
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.3e-124 450.7 451 62.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.8e-121 440.3 450 62.2
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 4.0e-121 439.1 452 60.4
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.0e-120 436.8 447 60.2
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.4e-120 436.0 447 60.2
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 4.5e-120 435.6 458 62.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.0e-119 434.5 446 61.0
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.3e-119 434.1 480 58.8
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.7e-119 433.7 452 59.5
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 4.2e-118 429.1 447 60.4
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.2e-118 429.1 451 59.6
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 4.2e-118 429.1 456 59.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.1e-118 428.3 452 59.3
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.1e-117 426.8 453 61.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.6e-117 425.6 455 60.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-116 423.3 446 63.7
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 6.7e-116 421.8 448 59.2
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.1e-115 421.0 458 58.5
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.3e-115 419.5 453 58.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.3e-115 419.5 451 58.3
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 9.7e-115 417.9 447 59.1
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.3e-114 415.2 479 56.2
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.9e-113 411.8 410 62.9
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.2e-112 411.0 449 57.0
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.3e-111 407.5 469 56.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.9e-111 406.4 445 58.2
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 3.2e-110 402.9 453 58.7
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 4.2e-110 402.5 456 55.9
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 4.2e-110 402.5 465 57.0
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 7.2e-110 401.7 451 60.1
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 9.4e-110 401.4 458 58.5
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 2.1e-109 400.2 463 55.9
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.7e-109 399.8 453 57.0
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 4.6e-109 399.1 446 59.4
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.4e-108 397.5 451 56.3
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.0e-108 396.4 453 59.4
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.9e-108 396.0 444 55.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 4.3e-107 392.5 449 56.8
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.7e-107 392.1 449 55.0
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.4e-105 386.7 453 56.5
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 6.9e-105 385.2 443 56.4
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 4.5e-104 382.5 441 55.1
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 4.5e-104 382.5 450 54.0
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.9e-104 382.1 458 58.3
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.0e-103 381.3 446 54.9
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.9e-103 379.8 452 54.9
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 5.0e-103 379.0 442 55.0
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 6.5e-103 378.6 451 53.9
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 2.5e-102 376.7 443 55.5
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 3.2e-102 376.3 446 56.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 7.2e-102 375.2 442 54.5
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 3.6e-101 372.9 445 55.1
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 6.7e-100 368.6 445 54.4
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 6.7e-100 368.6 409 57.2
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-99 367.5 445 54.2
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.5e-99 367.5 648 44.1
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 4.4e-99 365.9 265 80.4
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 7.4e-99 365.2 442 54.5
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 7.4e-99 365.2 442 54.5
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 7.4e-99 365.2 450 53.8
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 9.7e-99 364.8 441 54.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.3e-98 364.4 441 54.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 2.8e-98 363.2 449 53.2
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 8.2e-98 361.7 340 65.0
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 3.1e-97 359.8 290 69.7
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 5.3e-97 359.0 469 55.9
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.5e-96 357.5 289 69.6
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.7e-95 354.0 437 52.2
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.2e-95 353.6 441 56.2
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.1e-94 351.3 440 51.8
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.2e-94 349.4 438 51.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.2e-94 349.4 438 51.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.2e-93 347.8 454 51.5
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 2.7e-93 346.7 449 51.4
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 4.7e-93 345.9 450 52.9
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.0e-92 343.2 434 52.1
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 3.9e-92 342.8 452 55.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.1e-91 341.3 375 59.7
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.1e-91 341.3 382 57.6
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.1e-91 341.3 366 58.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.8e-89 334.0 519 44.3
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.8e-89 334.0 456 50.9
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.8e-89 334.0 453 54.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.1e-89 333.2 445 56.4
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 3.5e-88 329.7 437 49.9
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.5e-88 329.7 442 54.3
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.0e-84 316.6 452 52.7
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.4e-83 313.2 442 49.1
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.5e-80 303.1 446 44.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 3.8e-79 299.7 456 48.0
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 2.5e-78 297.0 447 52.3
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-77 294.3 440 50.9
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 3.6e-77 293.1 449 51.4
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 5.2e-76 289.3 448 49.1
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 6.8e-76 288.9 451 51.2
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 4.5e-72 276.2 442 43.0
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.5e-70 269.2 365 50.7
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 5.5e-70 269.2 455 50.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.0e-68 265.0 277 64.6
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.4e-65 252.7 292 63.7
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.1e-62 245.0 251 60.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.3e-58 231.5 442 38.5
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.5e-54 218.0 473 43.8
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.5e-54 217.2 226 57.5
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-53 214.9 246 49.2
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.6e-48 196.4 477 41.7
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.3e-44 184.1 456 35.3
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 6.4e-42 176.0 337 38.9
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 7.3e-38 162.5 470 36.0
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-31 141.4 166 65.7
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.0e-31 140.6 276 40.2
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.7e-23 114.8 151 50.3
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.6e-22 109.8 189 46.6
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 7.3e-22 109.4 189 46.6
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 9.6e-22 109.0 198 50.0
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.2e-19 102.1 82 69.5
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.5e-19 101.7 383 31.6
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.0e-15 89.0 84 57.1
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.0e-15 89.0 84 57.1
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 5.6e-14 83.2 149 53.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.1e-13 81.3 147 53.1
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.1e-12 77.4 192 38.0
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.3e-10 72.0 311 26.4
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.2e-10 71.2 89 48.3
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.2e-08 65.5 50 66.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 8.7e-07 59.3 78 47.4
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.1e-06 58.9 237 27.4


User provided reference genes

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