Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 1.2e-46 189.5 100 100.0
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 3.8e-19 98.2 85 61.2
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 7.1e-18 94.0 89 58.4
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 9.6e-15 83.6 84 56.0
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 2.1e-14 82.4 101 52.5
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 4.8e-14 81.3 84 54.8
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 6.2e-14 80.9 93 47.3
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 8.1e-14 80.5 87 51.7
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 1.1e-13 80.1 88 47.7
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 1.1e-13 80.1 78 50.0
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 1.4e-13 79.7 87 48.3
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 1.4e-13 79.7 87 50.6
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 1.4e-13 79.7 78 50.0
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 1.8e-13 79.3 98 49.0
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 1.8e-13 79.3 91 48.4
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 2.4e-13 79.0 86 50.0
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 3.1e-13 78.6 85 49.4
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 9.0e-13 77.0 80 50.0
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 1.2e-12 76.6 83 50.6
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 1.5e-12 76.3 87 48.3
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 1.5e-12 76.3 83 49.4
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 1.5e-12 76.3 82 50.0
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 3.4e-12 75.1 97 49.5
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 3.4e-12 75.1 83 47.0
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 4.5e-12 74.7 82 43.9
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 4.5e-12 74.7 86 51.2
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 1.0e-11 73.6 81 55.6
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 2.9e-11 72.0 91 50.5
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 6.5e-11 70.9 93 49.5
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 6.5e-11 70.9 85 43.5
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 8.4e-11 70.5 80 42.5
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 1.1e-10 70.1 96 43.8
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.4e-10 69.7 88 46.6
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 3.2e-10 68.6 84 45.2
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 4.2e-10 68.2 90 46.7
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 5.5e-10 67.8 89 37.1
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 9.3e-10 67.0 78 46.2
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 9.3e-10 67.0 91 47.3
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 1.2e-09 66.6 85 44.7
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 1.6e-09 66.2 83 41.0
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 3.5e-09 65.1 97 46.4
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 3.5e-09 65.1 78 43.6
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 1.0e-08 63.5 50 62.0
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 1.3e-08 63.2 86 51.2
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 1.3e-08 63.2 86 45.3
Eucgr.G02829 Eucalyptus grandis HOM05D055458 ORTHO05D010110 1.8e-08 62.8 78 46.2
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 3.0e-08 62.0 97 38.1
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 8.7e-08 60.5 87 51.7
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 8.7e-08 60.5 54 55.6
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 8.7e-08 60.5 54 55.6
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.1e-07 60.1 54 55.6
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.1e-07 60.1 54 55.6
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 1.5e-07 59.7 86 50.0
Aa31sc101G40 Aethionema arabicum HOM05D013386 ORTHO05D010110 3.3e-07 58.5 84 40.5
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 5.7e-07 57.8 83 43.4
CANSAT56G0495 Cannabis sativa HOM05D008287 ORTHO05D010110 7.4e-07 57.4 83 41.0
Thhalv10005354m.g Eutrema salsugineum HOM05D013386 ORTHO05D010110 7.4e-07 57.4 89 48.3
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 7.4e-07 57.4 54 55.6
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 7.4e-07 57.4 98 35.7
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 1.3e-06 56.6 36 63.9
Lsat_1_v5_gn_2_114761 Lactuca sativa HOM05D008287 ORTHO05D010110 1.6e-06 56.2 81 42.0
CARHR286230 Cardamine hirsuta HOM05D013386 ORTHO05D010110 3.7e-06 55.1 87 47.1
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 8.2e-06 53.9 32 68.8
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 8.2e-06 53.9 32 68.8


User provided reference genes

Program Settings