Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-121 438.0 214 100.0
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-85 319.3 214 71.5
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-66 255.8 214 57.5
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-62 243.8 214 53.7
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-57 225.7 211 51.7
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-42 176.8 167 52.1
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.6e-38 162.2 208 45.7
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.8e-38 161.4 208 45.2
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 3.0e-37 159.5 219 40.6
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 4.3e-36 155.6 216 39.8
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.6e-36 155.2 221 41.6
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-36 155.2 159 49.7
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-35 154.1 201 43.8
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.1e-35 153.3 205 41.5
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 2.8e-35 152.9 218 39.0
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.6e-35 152.5 218 40.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.2e-35 151.8 217 41.9
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.0e-35 151.4 218 40.8
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-34 151.0 215 42.3
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.2e-34 148.7 217 43.3
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.2e-34 148.7 217 41.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 6.8e-34 148.3 217 41.5
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.9e-34 147.9 200 40.0
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.5e-33 147.1 216 39.4
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.7e-32 143.7 218 40.4
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-32 143.7 216 38.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.9e-32 142.9 200 40.5
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-31 141.0 215 40.9
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-31 141.0 201 40.8
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-31 141.0 199 40.7
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.1e-31 139.0 214 39.7
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.1e-31 139.0 214 39.7
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 7.0e-31 138.3 201 39.8
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 9.2e-31 137.9 216 38.0
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 4.6e-30 135.6 216 37.0
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.9e-29 132.5 111 59.5
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 5.0e-29 132.1 210 40.0
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.5e-28 130.6 219 37.4
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 3.3e-28 129.4 216 37.0
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.1e-27 126.7 200 37.0
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-27 126.3 203 36.0
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.8e-27 126.3 173 39.9
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.8e-26 123.6 197 37.1
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.0e-26 122.5 195 39.0
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-25 120.9 158 41.8
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 7.5e-25 118.2 216 36.1
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-24 117.5 184 37.5
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-24 117.1 146 45.2
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.7e-24 117.1 201 36.3
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 8.3e-24 114.8 217 36.9
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 4.1e-23 112.5 198 34.8
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.4e-23 112.1 192 36.5
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.4e-23 112.1 243 33.3
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-22 110.2 204 35.8
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.1e-22 110.2 219 34.7
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.5e-22 109.4 216 34.3
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.5e-22 109.4 146 43.8
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-22 108.6 150 39.3
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-22 108.6 201 37.8
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-21 106.7 147 40.8
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-21 106.7 147 40.8
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 3.9e-21 105.9 168 37.5
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.1e-21 105.5 192 35.4
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 5.1e-21 105.5 200 34.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 6.6e-21 105.1 214 32.7
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.6e-21 104.8 201 36.8
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.1e-20 104.4 183 32.8
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 7.3e-20 101.7 200 33.5
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.5e-20 101.3 143 41.3
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.5e-20 101.3 213 35.2
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.5e-20 101.3 213 35.2
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.6e-19 99.4 148 42.6
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.7e-19 99.0 197 36.0
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-18 97.8 166 39.8
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-18 97.1 198 35.9
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-18 96.7 202 30.7
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-18 96.7 206 31.6
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-18 96.7 206 32.0
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 4.0e-18 95.9 203 36.0
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 5.2e-18 95.5 203 32.0
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.5e-17 94.0 192 30.7
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 1.5e-17 94.0 192 30.7
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.5e-17 94.0 204 31.9
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-17 94.0 129 39.5
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 2.0e-17 93.6 217 29.0
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.6e-17 93.2 192 30.2
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 4.4e-17 92.4 206 30.1
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 5.8e-17 92.0 214 31.8
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 5.8e-17 92.0 171 33.3
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 7.6e-17 91.7 193 30.1
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.9e-17 91.3 127 40.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 9.9e-17 91.3 127 40.9
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.9e-17 91.3 179 35.8
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.9e-17 91.3 179 35.8
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-16 90.5 164 32.9
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 2.2e-16 90.1 198 29.8
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-16 89.4 127 40.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-16 89.4 127 40.9
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 6.4e-16 88.6 198 34.8
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 6.4e-16 88.6 182 33.0
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 8.4e-16 88.2 178 33.7
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-15 87.4 127 40.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-15 87.0 127 40.9
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-15 87.0 127 39.4
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 2.4e-15 86.7 208 29.8
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-15 86.7 127 39.4
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 5.4e-15 85.5 127 38.6
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 7.1e-15 85.1 209 29.2
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-14 84.0 82 52.4
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 4.6e-14 82.4 208 32.2
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.0e-14 82.0 142 35.2
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 7.8e-14 81.6 159 30.8
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-12 76.6 166 34.3
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.3e-12 75.9 118 37.3
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 4.3e-12 75.9 208 30.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.6e-12 74.7 118 37.3
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.8e-10 70.5 144 33.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-10 70.5 166 33.7
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-10 70.5 166 33.7
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.4e-10 70.1 145 33.8
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-10 70.1 99 41.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-10 70.1 102 42.2
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 5.2e-10 68.9 148 31.1
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.9e-10 68.2 205 28.8
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 4.4e-09 65.9 172 30.8
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 7.6e-09 65.1 95 38.9
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.9e-09 64.7 216 29.2
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.7e-08 63.9 210 28.6
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.4e-08 61.6 101 40.6
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 8.4e-08 61.6 171 28.7
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-07 60.5 56 50.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 3.2e-07 59.7 171 28.1
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 7.1e-07 58.5 135 34.8
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 7.1e-07 58.5 135 34.8
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.6e-06 57.4 143 33.6
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-06 57.0 112 35.7
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.7e-06 56.6 45 62.2


User provided reference genes

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