Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006150 Simmondsia chinensis HOM05D002961 ORTHO05D003426 2.0e-55 218.8 102 100.0
Sc09g0006170 Simmondsia chinensis HOM05D002961 ORTHO05D003426 1.0e-32 143.3 99 69.7
Cfa001671 Carpinus fangiana HOM05D002961 ORTHO05D003426 1.7e-27 125.9 102 55.9
CiPaw.01G271000 Carya illinoinensis HOM05D002961 ORTHO05D003426 5.0e-27 124.4 98 57.1
CANSAT56G0472 Cannabis sativa HOM05D002961 ORTHO05D003426 6.5e-27 124.0 98 56.1
ClCG05G021100 Citrullus lanatus HOM05D002961 ORTHO05D003426 8.6e-27 123.6 98 58.2
Haze_16863 Corylus avellana HOM05D002961 ORTHO05D003426 8.6e-27 123.6 102 54.9
FAN10G0478 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.1e-26 123.2 96 58.3
FAN10G1125 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.1e-26 123.2 96 58.3
FAN01G0092 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-26 122.9 96 58.3
FAN03G0700 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-26 122.9 96 58.3
FvH4_7g19050 Fragaria vesca HOM05D002961 ORTHO05D003426 1.9e-26 122.5 96 58.3
FAN06G3681 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.9e-26 122.5 96 58.3
FAN06G4372 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.9e-26 122.5 96 58.3
QL08p055207 Quercus lobata HOM05D002961 ORTHO05D003426 1.9e-26 122.5 98 57.1
QL08p055257 Quercus lobata HOM05D002961 ORTHO05D003426 1.9e-26 122.5 98 57.1
Dinv00190 Davidia involucrata HOM05D002961 ORTHO05D003426 2.5e-26 122.1 98 57.1
MD01G1105800 Malus domestica HOM05D002961 ORTHO05D003426 2.5e-26 122.1 98 56.1
EL10Ac2g02683 Beta vulgaris HOM05D002961 ORTHO05D003426 5.5e-26 120.9 93 60.2
HanXRQChr12g0368721 Helianthus annuus HOM05D002961 ORTHO05D003426 9.5e-26 120.2 96 58.3
Hma1.2p1_0366F.1_g136890 Hydrangea macrophylla HOM05D002961 ORTHO05D003426 9.5e-26 120.2 98 56.1
Potri.008G037700 Populus trichocarpa HOM05D002961 ORTHO05D003426 9.5e-26 120.2 96 59.4
QL08p055272 Quercus lobata HOM05D002961 ORTHO05D003426 9.5e-26 120.2 98 56.1
Sed0014207 Sechium edule HOM05D002961 ORTHO05D003426 1.2e-25 119.8 98 56.1
Gohir.D05G296200 Gossypium hirsutum HOM05D002961 ORTHO05D003426 1.6e-25 119.4 94 58.5
Gorai.009G313000 Gossypium raimondii HOM05D002961 ORTHO05D003426 1.6e-25 119.4 94 58.5
Lj6g0009968 Lotus japonicus HOM05D002961 ORTHO05D003426 1.6e-25 119.4 99 56.6
Solyc10g084640.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 1.6e-25 119.4 98 54.1
Sopen10g034080 Solanum pennellii HOM05D002961 ORTHO05D003426 1.6e-25 119.4 98 54.1
Thecc.10G077100 Theobroma cacao HOM05D002961 ORTHO05D003426 1.6e-25 119.4 98 54.1
Glyma.10G109000 Glycine max HOM05D002961 ORTHO05D003426 2.1e-25 119.0 93 58.1
Lalb_Chr19g0129101 Lupinus albus HOM05D002961 ORTHO05D003426 2.1e-25 119.0 99 52.5
PGR142G2276 Punica granatum HOM05D002961 ORTHO05D003426 2.1e-25 119.0 97 55.7
RcHm_v2.0_Chr1g0362951 Rosa chinensis HOM05D002961 ORTHO05D003426 2.1e-25 119.0 95 56.8
Gohir.A05G296300 Gossypium hirsutum HOM05D002961 ORTHO05D003426 2.8e-25 118.6 94 58.5
Aqoxy1G01189 Aquilegia oxysepala HOM05D002961 ORTHO05D003426 3.6e-25 118.2 98 53.1
PSO339G6169 Papaver somniferum HOM05D002961 ORTHO05D003426 3.6e-25 118.2 97 53.6
Phvul.007G239400 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 3.6e-25 118.2 96 54.2
Potri.010G224800 Populus trichocarpa HOM05D002961 ORTHO05D003426 3.6e-25 118.2 96 57.3
Duzib106G0956 Durio zibethinus HOM05D002961 ORTHO05D003426 4.7e-25 117.9 92 59.8
TAR636G2919 Trochodendron aralioides HOM05D002961 ORTHO05D003426 4.7e-25 117.9 98 55.1
CAN.G688.8 Capsicum annuum HOM05D002961 ORTHO05D003426 6.1e-25 117.5 98 53.1
COL.COLO4_12162 Corchorus olitorius HOM05D002961 ORTHO05D003426 6.1e-25 117.5 92 58.7
CsaV3_5G036170 Cucumis sativus L. HOM05D002961 ORTHO05D003426 6.1e-25 117.5 98 55.1
VMungo0720G2309 Vigna mungo HOM05D002961 ORTHO05D003426 6.1e-25 117.5 96 54.2
Ciclev10032618m.g Citrus clementina HOM05D002961 ORTHO05D003426 8.0e-25 117.1 97 53.6
Peaxi162Scf01227g00007 Petunia axillaris HOM05D002961 ORTHO05D003426 8.0e-25 117.1 97 52.6
TPR.G13797 Trifolium pratense HOM05D002961 ORTHO05D003426 8.0e-25 117.1 96 57.3
Manes.07G097400 Manihot esculenta HOM05D002961 ORTHO05D003426 1.0e-24 116.7 96 54.2
Nn2g13743 Nelumbo nucifera HOM05D002961 ORTHO05D003426 1.0e-24 116.7 96 53.1
Actinidia22443 Actinidia chinensis HOM05D002961 ORTHO05D003426 1.4e-24 116.3 96 53.1
CDE02G3576 Ceratophyllum demersum HOM05D002961 ORTHO05D003426 1.4e-24 116.3 98 51.0
Lj3P882T56 Lonicera japonica HOM05D002961 ORTHO05D003426 1.4e-24 116.3 96 54.2
Oeu031329.1 Olea europaea HOM05D002961 ORTHO05D003426 1.4e-24 116.3 98 52.0
Rhsim03G0118600 Rhododendron simsii HOM05D002961 ORTHO05D003426 1.4e-24 116.3 101 51.5
Manes.10G048200 Manihot esculenta HOM05D002961 ORTHO05D003426 1.8e-24 115.9 96 53.1
Medtr1g049370 Medicago truncatula HOM05D002961 ORTHO05D003426 1.8e-24 115.9 99 54.5
Phvul.007G240100 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 1.8e-24 115.9 97 54.6
THA.LOC104825225 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 1.8e-24 115.9 96 52.1
ECA233G3034 Erigeron canadensis HOM05D002961 ORTHO05D003426 3.0e-24 115.2 97 53.6
Sabra10G0173800 Salix brachista HOM05D002961 ORTHO05D003426 4.0e-24 114.8 96 55.2
Ca_03078_v3 Cicer arietinum L. HOM05D002961 ORTHO05D003426 5.2e-24 114.4 96 56.2
MELO3C012417.2 Cucumis melo HOM05D002961 ORTHO05D003426 5.2e-24 114.4 98 53.1
Lsat_1_v5_gn_8_20401 Lactuca sativa HOM05D002961 ORTHO05D003426 5.2e-24 114.4 96 56.2
Nitab4.5_0007307g0010 Nicotiana tabacum HOM05D002961 ORTHO05D003426 5.2e-24 114.4 98 50.0
TWI38G1556 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 6.8e-24 114.0 96 53.1
unitig_749.g13572 Utricularia gibba HOM05D002961 ORTHO05D003426 6.8e-24 114.0 97 50.5
PSO063G7402 Papaver somniferum HOM05D002961 ORTHO05D003426 8.9e-24 113.6 97 51.5
Psat6g129400 Pisum sativum HOM05D002961 ORTHO05D003426 8.9e-24 113.6 97 53.6
Carub.0004s2107 Capsella rubella HOM05D002961 ORTHO05D003426 1.2e-23 113.2 96 52.1
THA.LOC104826902 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 1.2e-23 113.2 96 50.0
Lj5g0009305 Lotus japonicus HOM05D002961 ORTHO05D003426 1.5e-23 112.8 96 54.2
Nitab4.5_0000071g0200 Nicotiana tabacum HOM05D002961 ORTHO05D003426 1.5e-23 112.8 98 49.0
DCAR_006426 Daucus carota HOM05D002961 ORTHO05D003426 2.0e-23 112.5 96 53.1
AUR62030580 Chenopodium quinoa HOM05D002961 ORTHO05D003426 2.6e-23 112.1 93 55.9
MSTRG.9164 Avicennia marina HOM05D002961 ORTHO05D003426 3.4e-23 111.7 94 53.2
C03p25890 Brassica napus HOM05D002961 ORTHO05D003426 3.4e-23 111.7 98 50.0
Migut.F01970 Erythranthe guttata HOM05D002961 ORTHO05D003426 3.4e-23 111.7 94 48.9
Sp4g21380 Schrenkiella parvula HOM05D002961 ORTHO05D003426 3.4e-23 111.7 96 52.1
BcaC01g05491 Brassica carinata HOM05D002961 ORTHO05D003426 4.4e-23 111.3 97 50.5
BolC3t14973H Brassica oleracea HOM05D002961 ORTHO05D003426 4.4e-23 111.3 97 50.5
CSS0004023 Camellia sinensis var. sinensis HOM05D002961 ORTHO05D003426 4.4e-23 111.3 96 52.1
Cpa.g.c31528 Carica papaya HOM05D002961 ORTHO05D003426 4.4e-23 111.3 98 52.0
SGA_v2.0_scaffold62G21403 Striga asiatica HOM05D002961 ORTHO05D003426 5.7e-23 110.9 94 50.0
Aa31LG5G20660 Aethionema arabicum HOM05D002961 ORTHO05D003426 7.5e-23 110.5 96 52.1
ATR1149G016 Amborella trichopoda HOM05D002961 ORTHO05D003426 7.5e-23 110.5 101 51.5
CARHR133810 Cardamine hirsuta HOM05D002961 ORTHO05D003426 9.8e-23 110.2 96 51.0
SHI08927 Sapria himalayana HOM05D002961 ORTHO05D003426 9.8e-23 110.2 96 52.1
AL4G36330 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 1.3e-22 109.8 96 50.0
AL92U10030 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 1.3e-22 109.8 96 50.0
AT2G39020 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 1.3e-22 109.8 96 50.0
BcaB01g03642 Brassica carinata HOM05D002961 ORTHO05D003426 1.3e-22 109.8 98 49.0
ATR0680G063 Amborella trichopoda HOM05D002961 ORTHO05D003426 1.7e-22 109.4 96 52.1
VMungo0720G2456 Vigna mungo HOM05D002961 ORTHO05D003426 1.7e-22 109.4 94 51.1
Lalb_Chr01g0010461 Lupinus albus HOM05D002961 ORTHO05D003426 2.8e-22 108.6 96 52.1
Manes.07G085800 Manihot esculenta HOM05D002961 ORTHO05D003426 2.8e-22 108.6 96 51.0
SalBow6G2357 Salvia bowleyana HOM05D002961 ORTHO05D003426 2.8e-22 108.6 93 49.5
TAR633G0023 Trochodendron aralioides HOM05D002961 ORTHO05D003426 2.8e-22 108.6 97 49.5
A03p21820 Brassica napus HOM05D002961 ORTHO05D003426 8.3e-22 107.1 98 48.0
BraA03t11418Z Brassica rapa HOM05D002961 ORTHO05D003426 8.3e-22 107.1 98 48.0
Phvul.007G239500 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 8.3e-22 107.1 98 51.0
TWI63G1345 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 8.3e-22 107.1 90 54.4
Atru.chr12.812 Acer truncatum HOM05D002961 ORTHO05D003426 1.1e-21 106.7 97 48.5
Thhalv10017189m.g Eutrema salsugineum HOM05D002961 ORTHO05D003426 1.1e-21 106.7 96 49.0
DCAR_006425 Daucus carota HOM05D002961 ORTHO05D003426 1.4e-21 106.3 102 46.1
VMungo1383G2373 Vigna mungo HOM05D002961 ORTHO05D003426 1.4e-21 106.3 100 47.0
Potri.008G037600 Populus trichocarpa HOM05D002961 ORTHO05D003426 1.8e-21 105.9 97 51.5
Sp4g03890 Schrenkiella parvula HOM05D002961 ORTHO05D003426 1.8e-21 105.9 96 50.0
GSVIVG01016243001 Vitis vinifera HOM05D002961 ORTHO05D003426 2.4e-21 105.5 96 49.0
MSTRG.9163 Avicennia marina HOM05D002961 ORTHO05D003426 4.1e-21 104.8 94 50.0
Cc02_g11190 Coffea canephora HOM05D002961 ORTHO05D003426 4.1e-21 104.8 98 48.0
PSO407G0084 Papaver somniferum HOM05D002961 ORTHO05D003426 4.1e-21 104.8 102 45.1
Atru.chr12.813 Acer truncatum HOM05D002961 ORTHO05D003426 2.0e-20 102.4 89 50.6
CANSAT35G1379 Cannabis sativa HOM05D002961 ORTHO05D003426 2.0e-20 102.4 94 51.1
AT2G39030 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 2.7e-20 102.1 95 50.5
HPP92_018616 Vanilla planifolia HOM05D002961 ORTHO05D003426 2.7e-20 102.1 101 47.5
Carub.0004s2109 Capsella rubella HOM05D002961 ORTHO05D003426 4.5e-20 101.3 95 50.5
Glyma.02G156700 Glycine max HOM05D002961 ORTHO05D003426 4.5e-20 101.3 85 56.5
SEGI_09913 Sequoiadendron giganteum HOM05D002961 ORTHO05D003426 4.5e-20 101.3 92 50.0
Cfa001668 Carpinus fangiana HOM05D002961 ORTHO05D003426 1.0e-19 100.1 98 51.0
SMO116G0049 Selaginella moellendorffii HOM05D002961 ORTHO05D003426 1.3e-19 99.8 97 47.4
Sabra08G0025400 Salix brachista HOM05D002961 ORTHO05D003426 1.7e-19 99.4 93 48.4
Manes.07G097500 Manihot esculenta HOM05D002961 ORTHO05D003426 2.3e-19 99.0 96 46.9
Cpa.g.sc53.95 Carica papaya HOM05D002961 ORTHO05D003426 2.9e-19 98.6 83 53.0
Dinv36421 Davidia involucrata HOM05D002961 ORTHO05D003426 5.0e-19 97.8 81 55.6
Carub.0004s2106 Capsella rubella HOM05D002961 ORTHO05D003426 6.6e-19 97.4 95 46.3
EL10Ac2g04865 Beta vulgaris HOM05D002961 ORTHO05D003426 1.1e-18 96.7 100 45.0
Os03g0151600 Oryza sativa ssp. japonica HOM05D002961 ORTHO05D003426 1.5e-18 96.3 98 49.0
Nitab4.5_0000052g0120 Nicotiana tabacum HOM05D002961 ORTHO05D003426 5.6e-18 94.4 93 50.5
Sed0016707 Sechium edule HOM05D002961 ORTHO05D003426 7.3e-18 94.0 94 47.9
CAN.G1609.10 Capsicum annuum HOM05D002961 ORTHO05D000001 9.5e-18 93.6 97 46.4
Peaxi162Scf00523g00056 Petunia axillaris HOM05D002961 ORTHO05D003426 1.2e-17 93.2 94 46.8
AL4G36340 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 1.6e-17 92.8 95 50.5
AUR62012284 Chenopodium quinoa HOM05D002961 ORTHO05D003426 1.6e-17 92.8 102 43.1
PGSC0003DMG400014499 Solanum tuberosum HOM05D002961 ORTHO05D003426 2.1e-17 92.4 97 45.4
Nitab4.5_0003338g0090 Nicotiana tabacum HOM05D002961 ORTHO05D003426 2.8e-17 92.0 97 45.4
Solyc08g068280.2 Solanum lycopersicum HOM05D002961 ORTHO05D003426 3.6e-17 91.7 96 44.8
PGSC0003DMG400010832 Solanum tuberosum HOM05D002961 ORTHO05D003426 3.6e-17 91.7 97 45.4
Carub.0007s3340 Capsella rubella HOM05D002961 ORTHO05D003426 4.7e-17 91.3 96 46.9
AUR62022924 Chenopodium quinoa HOM05D002961 ORTHO05D003426 4.7e-17 91.3 97 43.3
CsaV3_5G036180 Cucumis sativus L. HOM05D002961 ORTHO05D003426 4.7e-17 91.3 94 44.7
EL10Ac2g04869 Beta vulgaris HOM05D002961 ORTHO05D003426 6.1e-17 90.9 97 44.3
MELO3C012418.2 Cucumis melo HOM05D002961 ORTHO05D003426 6.1e-17 90.9 94 44.7
MELO3C012419.2 Cucumis melo HOM05D002961 ORTHO05D003426 1.0e-16 90.1 99 43.4
Mapoly0179s0017 Marchantia polymorpha HOM05D002961 ORTHO05D003426 1.0e-16 90.1 92 45.7
Sopen08g002710 Solanum pennellii HOM05D002961 ORTHO05D003426 1.4e-16 89.7 99 40.4
EL10Ac2g04876 Beta vulgaris HOM05D002961 ORTHO05D003426 1.8e-16 89.4 93 48.4
SalBow4G2042 Salvia bowleyana HOM05D002961 ORTHO05D003426 1.8e-16 89.4 93 46.2
Cc02_g11200 Coffea canephora HOM05D002961 ORTHO05D003426 2.3e-16 89.0 98 42.9
Zm00001eb403080 Zea mays HOM05D002961 ORTHO05D003426 3.0e-16 88.6 92 45.7
PSO210G3713 Papaver somniferum HOM05D002961 ORTHO05D003426 4.0e-16 88.2 98 43.9
HPP92_008436 Vanilla planifolia HOM05D002961 ORTHO05D003426 4.0e-16 88.2 101 40.6
Zm00001eb004140 Zea mays HOM05D002961 ORTHO05D003426 4.0e-16 88.2 92 45.7
Sed0004049 Sechium edule HOM05D002961 ORTHO05D003426 5.2e-16 87.8 97 48.5
Nitab4.5_0010499g0020 Nicotiana tabacum HOM05D002961 ORTHO05D003426 8.9e-16 87.0 97 38.1
Pp3c5_21790 Physcomitrium patens HOM05D002961 ORTHO05D003426 8.9e-16 87.0 91 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2872 Anthoceros agrestis HOM05D002961 ORTHO05D003426 1.2e-15 86.7 96 39.6
CsaV3_5G036190 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.2e-15 86.7 102 40.2
PSO729G0216 Papaver somniferum HOM05D002961 ORTHO05D003426 2.0e-15 85.9 98 44.9
PGSC0003DMG400037933 Solanum tuberosum HOM05D002961 ORTHO05D003426 2.0e-15 85.9 96 39.6
PSO210G6097 Papaver somniferum HOM05D002961 ORTHO05D003426 3.4e-15 85.1 98 43.9
CBR_g18695 Chara braunii HOM05D002961 ORTHO05D003426 2.4e-13 79.0 98 38.8
Sed0001125 Sechium edule HOM05D002961 ORTHO05D003426 2.4e-13 79.0 90 45.6
SEGI_06691 Sequoiadendron giganteum HOM05D002961 ORTHO05D003426 2.4e-13 79.0 78 46.2
Sed0008789 Sechium edule HOM05D002961 ORTHO05D003426 3.2e-13 78.6 92 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2558 Anthoceros agrestis HOM05D002961 ORTHO05D003426 5.4e-13 77.8 89 41.6
Mapoly0139s0013 Marchantia polymorpha HOM05D002961 ORTHO05D003426 1.2e-12 76.6 94 41.5
Sopen12g032670 Solanum pennellii HOM05D002961 ORTHO05D003426 2.0e-12 75.9 98 33.7
Nitab4.5_0000838g0150 Nicotiana tabacum HOM05D002961 ORTHO05D003426 3.5e-12 75.1 97 33.0
CDE02G1397 Ceratophyllum demersum HOM05D002961 ORTHO05D003426 1.0e-11 73.6 57 54.4
Solyc12g096840.3 Solanum lycopersicum HOM05D002961 ORTHO05D003426 1.0e-11 73.6 98 32.7
Prupe.2G211200 Prunus persica HOM05D002961 ORTHO05D003426 2.3e-11 72.4 54 59.3
Peaxi162Scf00169g00510 Petunia axillaris HOM05D002961 ORTHO05D003426 6.6e-11 70.9 92 32.6
HPP92_018617 Vanilla planifolia HOM05D002961 ORTHO05D003426 1.5e-10 69.7 86 40.7
CAN.G566.24 Capsicum annuum HOM05D002961 ORTHO05D003426 3.3e-10 68.6 98 33.7
CSS0000191 Camellia sinensis var. sinensis HOM05D002961 ORTHO05D003426 9.5e-10 67.0 59 50.8
PGSC0003DMG400014773 Solanum tuberosum HOM05D002961 ORTHO05D003426 2.1e-09 65.9 95 35.8
CAN.G273.28 Capsicum annuum HOM05D002961 ORTHO05D024774 1.4e-08 63.2 98 34.7
RcHm_v2.0_Chr4g0438191 Rosa chinensis HOM05D002961 ORTHO05D003426 4.0e-08 61.6 57 49.1
Solyc08g006765.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 8.9e-08 60.5 75 38.7
Solyc08g068720.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 1.2e-07 60.1 95 32.6
CBR_g24228 Chara braunii HOM05D002961 ORTHO05D003426 5.8e-07 57.8 78 35.9
Pp3c5_12740 Physcomitrium patens HOM05D002961 ORTHO05D003426 9.8e-07 57.0 95 30.5
Pp3c5_12767 Physcomitrium patens HOM05D002961 ORTHO05D003426 9.8e-07 57.0 95 30.5
PGSC0003DMG400010997 Solanum tuberosum HOM05D002961 ORTHO05D003426 1.7e-06 56.2 45 53.3
Hma1.2p1_0366F.1_g136880 Hydrangea macrophylla HOM05D002961 ORTHO05D003426 4.9e-06 54.7 93 34.4


User provided reference genes

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