Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005790 Simmondsia chinensis HOM05D004158 ORTHO05D004884 9.9e-121 436.8 221 100.0
Sc25g0001340 Simmondsia chinensis HOM05D004158 ORTHO05D004884 2.2e-83 312.8 224 67.9
TAR623G1307 Trochodendron aralioides HOM05D004158 ORTHO05D004884 9.4e-79 297.4 196 69.4
CiPaw.14G027300 Carya illinoinensis HOM05D004158 ORTHO05D004884 8.8e-77 290.8 225 64.0
QL04p040389 Quercus lobata HOM05D004158 ORTHO05D004884 8.8e-77 290.8 202 67.3
PSO063G5270 Papaver somniferum HOM05D004158 ORTHO05D004884 2.6e-76 289.3 192 68.2
PSO339G4003 Papaver somniferum HOM05D004158 ORTHO05D004884 2.6e-76 289.3 192 68.2
Nn6g35104 Nelumbo nucifera HOM05D004158 ORTHO05D004884 1.7e-75 286.6 219 63.0
Hund06745 Selenicereus undatus HOM05D004158 ORTHO05D004884 1.7e-75 286.6 179 73.2
CiPaw.13G034700 Carya illinoinensis HOM05D004158 ORTHO05D004884 6.3e-75 284.6 202 66.8
Cfa011201 Carpinus fangiana HOM05D004158 ORTHO05D004884 8.2e-75 284.3 201 66.7
Dinv20856 Davidia involucrata HOM05D004158 ORTHO05D004884 1.4e-74 283.5 196 68.4
TWI38G1342 Tripterygium wilfordii HOM05D004158 ORTHO05D004884 5.3e-74 281.6 200 68.5
Nn2g13950 Nelumbo nucifera HOM05D004158 ORTHO05D004884 1.5e-73 280.0 196 65.3
AUR62031975 Chenopodium quinoa HOM05D004158 ORTHO05D004884 2.6e-73 279.3 182 70.9
FAN10G3528 Fragaria x ananassa HOM05D004158 ORTHO05D004884 2.6e-73 279.3 196 66.3
FAN01G2366 Fragaria x ananassa HOM05D004158 ORTHO05D004884 3.4e-73 278.9 196 66.3
AUR62022268 Chenopodium quinoa HOM05D004158 ORTHO05D004884 4.5e-73 278.5 182 71.4
Hund06746 Selenicereus undatus HOM05D004158 ORTHO05D004884 4.5e-73 278.5 179 71.5
Prupe.2G096900 Prunus persica HOM05D004158 ORTHO05D004884 1.0e-72 277.3 196 65.8
RcHm_v2.0_Chr1g0336981 Rosa chinensis HOM05D004158 ORTHO05D004884 1.7e-72 276.6 195 65.1
Aqoxy1G01001 Aquilegia oxysepala HOM05D004158 ORTHO05D004884 2.2e-72 276.2 196 65.3
Lj5g0005466 Lotus japonicus HOM05D004158 ORTHO05D004884 2.9e-72 275.8 197 66.5
Medtr1g090920 Medicago truncatula HOM05D004158 ORTHO05D004884 5.0e-72 275.0 197 65.0
Ca_10468_v3 Cicer arietinum L. HOM05D004158 ORTHO05D004884 1.9e-71 273.1 197 64.5
Psat6g176040 Pisum sativum HOM05D004158 ORTHO05D004884 3.2e-71 272.3 197 64.5
Glyma.10G200700 Glycine max HOM05D004158 ORTHO05D004884 4.2e-71 271.9 197 65.5
FvH4_7g07030 Fragaria vesca HOM05D004158 ORTHO05D004884 5.5e-71 271.6 197 65.5
FAN06G0479 Fragaria x ananassa HOM05D004158 ORTHO05D004884 9.4e-71 270.8 197 65.5
MD02G1240900 Malus domestica HOM05D004158 ORTHO05D004884 1.2e-70 270.4 196 63.3
MD07G1076200 Malus domestica HOM05D004158 ORTHO05D004884 1.2e-70 270.4 193 64.8
Potri.008G028900 Populus trichocarpa HOM05D004158 ORTHO05D004884 1.2e-70 270.4 217 61.8
TPR.G21919 Trifolium pratense HOM05D004158 ORTHO05D004884 1.6e-70 270.0 197 64.0
Ah.04g163550 Amaranthus hybridus HOM05D004158 ORTHO05D004884 3.6e-70 268.9 169 73.4
VMungo0720G2210 Vigna mungo HOM05D004158 ORTHO05D004884 3.6e-70 268.9 197 64.5
Haze_02645 Corylus avellana HOM05D004158 ORTHO05D004884 4.7e-70 268.5 220 60.0
Lalb_Chr02g0151231 Lupinus albus HOM05D004158 ORTHO05D004884 4.7e-70 268.5 197 62.4
ClCG05G021490 Citrullus lanatus HOM05D004158 ORTHO05D004884 6.1e-70 268.1 192 68.2
Phvul.007G144400 Phaseolus vulgaris HOM05D004158 ORTHO05D004884 7.9e-70 267.7 221 59.7
Glyma.20G189900 Glycine max HOM05D004158 ORTHO05D004884 1.0e-69 267.3 197 64.0
PGR142G1291 Punica granatum HOM05D004158 ORTHO05D004884 1.8e-69 266.5 200 63.5
Eucgr.G02723 Eucalyptus grandis HOM05D004158 ORTHO05D004884 3.0e-69 265.8 224 58.5
CSS0041510 Camellia sinensis var. sinensis HOM05D004158 ORTHO05D004884 6.7e-69 264.6 179 69.3
CsaV3_5G035760 Cucumis sativus L. HOM05D004158 ORTHO05D004884 6.7e-69 264.6 177 70.1
Lalb_Chr21g0313121 Lupinus albus HOM05D004158 ORTHO05D004884 1.1e-68 263.8 197 62.4
CDE05G0220 Ceratophyllum demersum HOM05D004158 ORTHO05D004884 1.5e-68 263.5 191 60.7
Potri.010G232700 Populus trichocarpa HOM05D004158 ORTHO05D004884 2.0e-68 263.1 179 69.8
Sed0009937 Sechium edule HOM05D004158 ORTHO05D004884 2.6e-68 262.7 177 69.5
vmacro07210 Vaccinium macrocarpon HOM05D004158 ORTHO05D004884 2.6e-68 262.7 191 65.4
Lalb_Chr06g0170091 Lupinus albus HOM05D004158 ORTHO05D004884 3.3e-68 262.3 196 62.8
Duzib114G0557 Durio zibethinus HOM05D004158 ORTHO05D004884 5.7e-68 261.5 174 70.1
Gohir.D05G291601 Gossypium hirsutum HOM05D004158 ORTHO05D004884 7.4e-68 261.2 174 70.7
Gorai.009G307300 Gossypium raimondii HOM05D004158 ORTHO05D004884 7.4e-68 261.2 174 70.7
Rhsim03G0110500 Rhododendron simsii HOM05D004158 ORTHO05D004884 7.4e-68 261.2 174 68.4
Cpa.g.sc128.66 Carica papaya HOM05D004158 ORTHO05D004884 1.7e-67 260.0 179 70.4
Sabra10G0180500 Salix brachista HOM05D004158 ORTHO05D004884 2.2e-67 259.6 212 61.3
Actinidia18561 Actinidia chinensis HOM05D004158 ORTHO05D004884 3.7e-67 258.8 177 66.1
Cc02_g10420 Coffea canephora HOM05D004158 ORTHO05D004884 4.8e-67 258.5 180 66.1
Gohir.A05G290400 Gossypium hirsutum HOM05D004158 ORTHO05D004884 4.8e-67 258.5 174 69.5
ATR0665G113 Amborella trichopoda HOM05D004158 ORTHO05D004884 1.1e-66 257.3 195 58.5
Thecc.10G093600 Theobroma cacao HOM05D004158 ORTHO05D004884 1.1e-66 257.3 176 69.3
GSVIVG01034672001 Vitis vinifera HOM05D004158 ORTHO05D004884 1.4e-66 256.9 193 63.7
COL.COLO4_07610 Corchorus olitorius HOM05D004158 ORTHO05D004884 3.1e-66 255.8 174 67.8
Sabra08G0019400 Salix brachista HOM05D004158 ORTHO05D004884 4.1e-66 255.4 238 56.3
MD02G1240800 Malus domestica HOM05D004158 ORTHO05D004884 7.0e-66 254.6 213 57.7
Hma1.2p1_0492F.1_g164760 Hydrangea macrophylla HOM05D004158 ORTHO05D004884 1.2e-65 253.8 189 62.4
Lj3A934G31 Lonicera japonica HOM05D004158 ORTHO05D004884 2.0e-65 253.1 189 62.4
CDE05G1361 Ceratophyllum demersum HOM05D004158 ORTHO05D004884 4.5e-65 251.9 191 59.2
MELO3C012377.2 Cucumis melo HOM05D004158 ORTHO05D004884 7.7e-65 251.1 207 60.4
arahy.Tifrunner.gnm1.ann1.SHL6Z6 Arachis hypogaea HOM05D004158 ORTHO05D004884 1.7e-64 250.0 189 64.0
arahy.Tifrunner.gnm1.ann1.16QXFL Arachis hypogaea HOM05D004158 ORTHO05D004884 2.9e-64 249.2 189 63.5
PSO063G3822 Papaver somniferum HOM05D004158 ORTHO05D004884 2.9e-64 249.2 183 63.4
PSO339G6367 Papaver somniferum HOM05D004158 ORTHO05D004884 3.8e-64 248.8 193 58.5
SalBow6G6612 Salvia bowleyana HOM05D004158 ORTHO05D004884 3.8e-64 248.8 180 63.3
PGSC0003DMG400023377 Solanum tuberosum HOM05D004158 ORTHO05D004884 5.0e-64 248.4 177 65.0
PSO384G3917 Papaver somniferum HOM05D004158 ORTHO05D004884 1.1e-63 247.3 193 58.0
Nitab4.5_0003408g0110 Nicotiana tabacum HOM05D004158 ORTHO05D004884 1.5e-63 246.9 177 65.5
Sopen11g003630 Solanum pennellii HOM05D004158 ORTHO05D004884 2.5e-63 246.1 178 65.2
Solyc11g007770.2 Solanum lycopersicum HOM05D004158 ORTHO05D004884 3.2e-63 245.7 178 64.6
PGSC0003DMG400027356 Solanum tuberosum HOM05D004158 ORTHO05D004884 3.2e-63 245.7 178 65.2
Atru.chr12.930 Acer truncatum HOM05D004158 ORTHO05D004884 4.2e-63 245.4 185 61.6
BcaB05g21757 Brassica carinata HOM05D004158 ORTHO05D004884 4.2e-63 245.4 174 64.9
Peaxi162Scf00398g00720 Petunia axillaris HOM05D004158 ORTHO05D004884 4.2e-63 245.4 180 63.9
BcaC06g32159 Brassica carinata HOM05D004158 ORTHO05D004884 5.5e-63 245.0 174 63.8
Manes.06G020900 Manihot esculenta HOM05D004158 ORTHO05D004884 5.5e-63 245.0 177 66.1
MSTRG.406 Avicennia marina HOM05D004158 ORTHO05D004884 7.2e-63 244.6 180 63.9
MSTRG.9120 Avicennia marina HOM05D004158 ORTHO05D004884 1.6e-62 243.4 177 64.4
AL6G14142 Arabidopsis lyrata HOM05D004158 ORTHO05D004884 2.1e-62 243.0 174 64.4
A10p31590 Brassica napus HOM05D004158 ORTHO05D004884 2.1e-62 243.0 174 62.6
BraA10t45205Z Brassica rapa HOM05D004158 ORTHO05D004884 2.1e-62 243.0 174 62.6
Nitab4.5_0000096g0160 Nicotiana tabacum HOM05D004158 ORTHO05D004884 2.1e-62 243.0 177 63.8
Oeu059840.1 Olea europaea HOM05D004158 ORTHO05D004884 2.7e-62 242.7 209 57.4
C09p72260 Brassica napus HOM05D004158 ORTHO05D004884 4.7e-62 241.9 174 62.6
Ciclev10030719m.g Citrus clementina HOM05D004158 ORTHO05D004884 4.7e-62 241.9 173 65.3
CAN.G135.48 Capsicum annuum HOM05D004158 ORTHO05D004884 6.1e-62 241.5 177 65.0
SGA_v2.0_scaffold62G21518 Striga asiatica HOM05D004158 ORTHO05D004884 6.1e-62 241.5 174 65.5
AT5G04500 Arabidopsis thaliana HOM05D004158 ORTHO05D004884 8.0e-62 241.1 174 62.6
Migut.F01667 Erythranthe guttata HOM05D004158 ORTHO05D004884 8.0e-62 241.1 177 62.1
Peaxi162Scf00004g00010 Petunia axillaris HOM05D004158 ORTHO05D004884 8.0e-62 241.1 171 64.3
BolC9t59970H Brassica oleracea HOM05D004158 ORTHO05D004884 1.4e-61 240.4 174 62.1
Duzib128G0995 Durio zibethinus HOM05D004158 ORTHO05D004884 1.4e-61 240.4 138 76.8
CARHR208770 Cardamine hirsuta HOM05D004158 ORTHO05D004884 1.8e-61 240.0 174 62.6
THA.LOC104816449 Tarenaya hassleriana HOM05D004158 ORTHO05D004884 3.0e-61 239.2 174 62.1
Nitab4.5_0000593g0240 Nicotiana tabacum HOM05D004158 ORTHO05D004884 4.0e-61 238.8 177 65.0
Sp1g23120 Schrenkiella parvula HOM05D004158 ORTHO05D004884 4.0e-61 238.8 174 62.6
Solyc05g055420.4 Solanum lycopersicum HOM05D004158 ORTHO05D004884 4.0e-61 238.8 177 63.8
Carub.0006s0343 Capsella rubella HOM05D004158 ORTHO05D004884 5.2e-61 238.4 174 63.2
Nitab4.5_0007922g0020 Nicotiana tabacum HOM05D004158 ORTHO05D004884 5.2e-61 238.4 177 62.7
BraA02t04815Z Brassica rapa HOM05D004158 ORTHO05D004884 1.1e-60 237.3 174 63.8
CAN.G1891.11 Capsicum annuum HOM05D004158 ORTHO05D004884 1.1e-60 237.3 187 59.4
Sopen05g033860 Solanum pennellii HOM05D004158 ORTHO05D004884 1.5e-60 236.9 177 62.7
Aqoxy2G01507 Aquilegia oxysepala HOM05D004158 ORTHO05D004884 2.0e-60 236.5 194 56.2
SalBow4G0446 Salvia bowleyana HOM05D004158 ORTHO05D004884 2.0e-60 236.5 177 61.6
Aa31LG9G6390 Aethionema arabicum HOM05D004158 ORTHO05D004884 3.3e-60 235.7 178 62.4
DCAR_019047 Daucus carota HOM05D004158 ORTHO05D004884 3.3e-60 235.7 177 62.7
Migut.F00926 Erythranthe guttata HOM05D004158 ORTHO05D004884 3.3e-60 235.7 180 60.6
BolC2t06153H Brassica oleracea HOM05D004158 ORTHO05D004884 4.4e-60 235.3 174 62.6
BcaC03g12948 Brassica carinata HOM05D004158 ORTHO05D004884 5.7e-60 235.0 174 62.6
C02p01960 Brassica napus HOM05D004158 ORTHO05D004884 7.5e-60 234.6 174 62.1
ECA232G3252 Erigeron canadensis HOM05D004158 ORTHO05D004884 1.7e-59 233.4 182 57.7
Aa31LG11G5370 Aethionema arabicum HOM05D004158 ORTHO05D004884 6.3e-59 231.5 175 62.3
unitig_748.g8777 Utricularia gibba HOM05D004158 ORTHO05D004884 1.1e-58 230.7 167 63.5
Lsat_1_v5_gn_9_70320 Lactuca sativa HOM05D004158 ORTHO05D004884 1.6e-57 226.9 189 56.1
SHI21307 Sapria himalayana HOM05D004158 ORTHO05D004884 2.7e-57 226.1 173 61.3
SGA_v2.0_scaffold13G06506 Striga asiatica HOM05D004158 ORTHO05D004884 3.5e-57 225.7 166 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1503 Anthoceros agrestis HOM05D004158 ORTHO05D004884 1.7e-56 223.4 208 51.4
MBI04_g34128_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 5.0e-56 221.9 198 55.6
Pp3c6_28590 Physcomitrium patens HOM05D004158 ORTHO05D004884 1.1e-55 220.7 203 53.7
HanXRQChr08g0218041 Helianthus annuus HOM05D004158 ORTHO05D004884 1.5e-55 220.3 167 59.9
HPP92_019597 Vanilla planifolia HOM05D004158 ORTHO05D004884 1.5e-55 220.3 176 60.2
HanXRQChr13g0404601 Helianthus annuus HOM05D004158 ORTHO05D004884 1.9e-55 219.9 184 56.5
Lsat_1_v5_gn_8_22880 Lactuca sativa HOM05D004158 ORTHO05D004884 1.9e-55 219.9 174 56.3
Mapoly0001s0350 Marchantia polymorpha HOM05D004158 ORTHO05D004884 1.9e-55 219.9 207 48.8
HanXRQChr09g0247121 Helianthus annuus HOM05D004158 ORTHO05D004884 3.2e-55 219.2 169 58.6
EL10Ac4g08627 Beta vulgaris HOM05D004158 ORTHO05D004884 1.2e-54 217.2 182 59.3
SMO367G0291 Selaginella moellendorffii HOM05D004158 ORTHO05D004884 3.0e-53 212.6 155 61.9
Pp3c5_3040 Physcomitrium patens HOM05D004158 ORTHO05D004884 5.2e-53 211.8 186 50.5
ATR0749G020 Amborella trichopoda HOM05D004158 ORTHO05D004884 8.8e-53 211.1 161 60.9
Pp3c16_2210 Physcomitrium patens HOM05D004158 ORTHO05D004884 2.6e-52 209.5 207 48.8
Os05g0540000 Oryza sativa ssp. japonica HOM05D004158 ORTHO05D004884 3.0e-45 186.0 174 50.6
Zm00001eb294280 Zea mays HOM05D004158 ORTHO05D004884 3.0e-45 186.0 152 55.3
Zm00001eb342340 Zea mays HOM05D004158 ORTHO05D004884 3.0e-45 186.0 152 53.9
Os03g0684500 Oryza sativa ssp. japonica HOM05D004158 ORTHO05D004884 5.7e-44 181.8 131 61.1
Zm00001eb053370 Zea mays HOM05D004158 ORTHO05D004884 1.7e-43 180.3 167 52.1
MBI01_g11032_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 5.6e-39 165.2 106 68.9
ECA233G5256 Erigeron canadensis HOM05D004158 ORTHO05D004884 1.4e-37 160.6 100 65.0
Thhalv10012710m.g Eutrema salsugineum HOM05D004158 ORTHO05D004884 4.4e-36 155.6 174 47.7
Manes.10G053900 Manihot esculenta HOM05D004158 ORTHO05D004884 8.3e-35 151.4 139 59.0
unitig_746.g26628 Utricularia gibba HOM05D004158 ORTHO05D004884 2.4e-34 149.8 89 69.7
CAN.G765.11 Capsicum annuum HOM05D004158 ORTHO05D004884 3.9e-32 142.5 87 73.6
RcHm_v2.0_Chr1g0359101 Rosa chinensis HOM05D004158 ORTHO05D004884 1.2e-30 137.5 112 57.1
Oeu047512.1 Olea europaea HOM05D004158 ORTHO05D004884 2.8e-22 109.8 62 74.2
MSTRG.27512 Avicennia marina HOM05D004158 ORTHO05D004884 1.8e-21 107.1 62 69.4
MBI01_g11031_MAGBIO Magnolia biondii HOM05D004158 ORTHO05D004884 5.2e-21 105.5 115 48.7
Oeu032438.1 Olea europaea HOM05D004158 ORTHO05D004884 1.8e-13 80.5 45 71.1
Cre09.g388450 Chlamydomonas reinhardtii HOM05D004158 ORTHO05D004884 6.4e-11 72.0 190 30.0
FAN13G2508 Fragaria x ananassa HOM05D004158 ORTHO05D004884 2.1e-09 67.0 45 64.4


User provided reference genes

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