Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.6e-48 194.1 91 100.0
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.5e-26 120.6 79 72.2
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.3e-23 112.8 87 59.8
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.6e-19 98.6 70 61.4
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 3.4e-19 98.2 73 57.5
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 5.9e-19 97.4 72 58.3
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 7.6e-19 97.1 85 49.4
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 7.6e-19 97.1 72 58.3
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 7.6e-19 97.1 72 58.3
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 7.6e-19 97.1 80 56.2
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 2.2e-18 95.5 72 58.3
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 3.8e-18 94.7 74 62.2
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 5.0e-18 94.4 69 63.8
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 6.5e-18 94.0 72 56.9
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 8.5e-18 93.6 75 60.0
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 8.5e-18 93.6 81 51.9
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 8.5e-18 93.6 72 55.6
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 1.1e-17 93.2 78 55.1
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 1.1e-17 93.2 67 62.7
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.1e-17 93.2 67 59.7
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 1.4e-17 92.8 65 64.6
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.9e-17 92.4 69 58.0
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 1.9e-17 92.4 67 59.7
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 2.5e-17 92.0 86 47.7
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 2.5e-17 92.0 87 46.0
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 2.5e-17 92.0 73 53.4
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 3.2e-17 91.7 88 46.6
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 5.5e-17 90.9 75 52.0
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 5.5e-17 90.9 76 51.3
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 7.2e-17 90.5 67 58.2
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 7.2e-17 90.5 70 55.7
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 7.2e-17 90.5 75 57.3
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 9.3e-17 90.1 80 53.8
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 1.6e-16 89.4 74 55.4
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 2.1e-16 89.0 66 54.5
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 2.7e-16 88.6 81 53.1
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 4.6e-16 87.8 69 58.0
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 4.6e-16 87.8 76 53.9
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 4.6e-16 87.8 69 58.0
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 4.6e-16 87.8 69 58.0
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 7.9e-16 87.0 69 59.4
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 7.9e-16 87.0 76 53.9
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 1.4e-15 86.3 73 54.8
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.8e-15 85.9 77 48.1
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 1.8e-15 85.9 77 51.9
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 1.8e-15 85.9 77 51.9
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 1.8e-15 85.9 66 53.0
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 1.8e-15 85.9 73 53.4
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 1.8e-15 85.9 69 58.0
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 2.3e-15 85.5 89 43.8
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 3.0e-15 85.1 84 45.2
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 3.0e-15 85.1 72 58.3
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 3.9e-15 84.7 88 47.7
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 3.9e-15 84.7 88 47.7
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 5.1e-15 84.3 64 56.2
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 5.1e-15 84.3 76 51.3
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 6.7e-15 84.0 83 44.6
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 8.8e-15 83.6 80 45.0
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.5e-14 82.8 80 45.0
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.5e-14 82.8 71 56.3
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 1.9e-14 82.4 66 56.1
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 1.9e-14 82.4 66 56.1
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 1.9e-14 82.4 63 61.9
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 1.9e-14 82.4 65 55.4
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 2.5e-14 82.0 66 57.6
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 2.5e-14 82.0 71 56.3
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 3.3e-14 81.6 66 56.1
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 4.3e-14 81.3 66 57.6
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 5.7e-14 80.9 67 58.2
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 5.7e-14 80.9 78 48.7
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 5.7e-14 80.9 73 53.4
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 7.4e-14 80.5 68 51.5
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 7.4e-14 80.5 66 54.5
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 7.4e-14 80.5 66 54.5
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 9.7e-14 80.1 63 58.7
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 9.7e-14 80.1 66 57.6
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 9.7e-14 80.1 80 45.0
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 1.7e-13 79.3 66 56.1
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.7e-13 79.3 79 49.4
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.7e-13 79.3 73 49.3
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 2.2e-13 79.0 62 59.7
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.2e-13 79.0 77 48.1
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 2.2e-13 79.0 88 48.9
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.8e-13 78.6 69 53.6
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 3.7e-13 78.2 64 53.1
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 3.7e-13 78.2 77 49.4
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 4.8e-13 77.8 66 53.0
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 4.8e-13 77.8 74 51.4
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 6.3e-13 77.4 62 58.1
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 1.4e-12 76.3 63 57.1
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.8e-12 75.9 66 53.0
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 5.3e-12 74.3 64 54.7
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 5.3e-12 74.3 64 54.7
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 5.3e-12 74.3 63 54.0
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 5.3e-12 74.3 66 51.5
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 6.9e-12 73.9 76 47.4
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 6.9e-12 73.9 76 47.4
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 6.9e-12 73.9 69 50.7
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.5e-11 72.8 68 48.5
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 1.5e-11 72.8 73 47.9
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 4.5e-11 71.2 67 52.2
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.9e-11 70.9 44 72.7
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 7.7e-11 70.5 69 44.9
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 1.3e-10 69.7 67 50.7
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 1.7e-10 69.3 70 44.3
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 8.5e-10 67.0 89 37.1
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 9.4e-09 63.5 65 43.1
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 2.7e-08 62.0 58 48.3
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 3.6e-08 61.6 39 69.2
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 6.1e-08 60.8 61 44.3
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 6.1e-08 60.8 83 34.9
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 8.8e-07 57.0 68 36.8


User provided reference genes

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