Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 0.0e+00 1352.8 713 100.0
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 2.3e-158 563.5 689 49.6
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 6.2e-140 502.3 688 45.1
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 2.1e-135 487.3 594 48.0
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 4.3e-133 479.6 686 44.6
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 4.0e-131 473.0 686 43.7
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 7.8e-127 458.8 689 44.1
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 3.5e-119 433.3 695 42.2
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 1.8e-118 431.0 692 41.6
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 2.2e-113 414.1 695 41.6
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.9e-113 413.7 696 41.7
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.4e-112 411.4 696 40.5
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 5.5e-112 409.5 680 41.9
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 5.6e-109 399.4 687 38.7
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 5.6e-109 399.4 698 39.8
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 1.3e-108 398.3 701 39.2
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 3.7e-108 396.7 679 41.4
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 8.2e-108 395.6 604 42.2
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.4e-107 394.8 604 42.2
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 1.5e-106 391.3 694 40.2
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 2.0e-106 391.0 604 42.4
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 3.4e-106 390.2 683 39.4
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 1.3e-105 388.3 690 39.3
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 1.7e-105 387.9 682 40.2
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.2e-105 387.5 712 38.8
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 8.4e-105 385.6 276 76.1
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.1e-104 385.2 704 38.9
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 5.5e-104 382.9 669 38.0
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 1.6e-103 381.3 704 38.5
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 3.5e-103 380.2 694 38.6
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 4.6e-103 379.8 551 44.5
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 6.0e-103 379.4 708 38.7
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 1.3e-102 378.3 702 39.0
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 8.7e-102 375.6 688 39.8
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 8.7e-102 375.6 703 38.3
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 8.7e-102 375.6 682 38.3
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 4.3e-101 373.2 693 39.0
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 4.3e-101 373.2 553 44.5
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.7e-101 372.9 340 62.6
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.2e-100 370.9 597 42.7
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 1.8e-99 367.9 695 38.1
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 3.1e-99 367.1 679 41.8
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 3.1e-99 367.1 698 37.0
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 3.1e-99 367.1 711 38.5
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 5.3e-99 366.3 704 37.2
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 6.9e-99 365.9 756 37.6
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 1.2e-98 365.2 706 38.5
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 1.2e-98 365.2 695 37.7
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 5.0e-97 359.8 500 47.0
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 3.2e-96 357.1 684 37.3
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 3.2e-96 357.1 684 37.3
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 4.2e-96 356.7 701 37.5
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 7.2e-96 355.9 673 38.2
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 1.2e-95 355.1 700 38.4
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 7.9e-95 352.4 697 38.2
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 1.8e-94 351.3 699 36.9
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 6.7e-94 349.4 753 36.4
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 6.7e-94 349.4 715 38.3
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 5.7e-93 346.3 690 37.4
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 7.4e-93 345.9 700 38.0
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 2.8e-92 344.0 701 37.5
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 4.8e-92 343.2 596 39.8
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.6e-90 337.4 705 36.3
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 2.2e-89 334.3 543 42.2
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 5.0e-89 333.2 696 36.1
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 5.0e-89 333.2 690 36.4
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 1.4e-88 331.6 699 35.5
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 2.5e-88 330.9 682 36.7
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 9.4e-88 328.9 691 35.7
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 3.6e-87 327.0 553 38.9
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 6.1e-87 326.2 688 35.0
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 1.8e-86 324.7 682 36.2
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.3e-86 324.3 594 36.9
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 2.3e-86 324.3 582 39.7
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 5.1e-86 323.2 351 51.9
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 2.6e-85 320.9 473 45.0
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 4.4e-85 320.1 570 38.4
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 2.8e-84 317.4 352 52.0
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.4e-83 315.1 688 34.4
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.4e-83 315.1 670 35.4
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 2.9e-81 307.4 685 35.0
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.9e-81 307.4 700 35.1
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 2.9e-81 307.4 587 38.3
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 2.9e-81 307.4 683 35.1
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 5.0e-81 306.6 670 34.5
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 2.5e-80 304.3 576 36.8
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 4.2e-80 303.5 605 36.9
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 1.2e-79 302.0 575 36.9
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 2.1e-79 301.2 697 34.4
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 8.8e-78 295.8 545 37.2
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 2.6e-77 294.3 533 36.6
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 3.7e-76 290.4 685 34.5
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 5.3e-75 286.6 560 35.9
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 7.0e-75 286.2 603 34.8
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 1.0e-73 282.3 560 37.1
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 5.0e-73 280.0 584 34.9
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 3.2e-72 277.3 682 32.8
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.5e-72 276.6 222 65.3
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 1.0e-65 255.8 607 33.8
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 1.9e-64 251.5 389 42.7
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 2.1e-63 248.1 462 36.8
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 3.4e-61 240.7 598 33.3
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 9.1e-59 232.6 677 32.1
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 9.1e-59 232.6 673 31.4
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 2.7e-58 231.1 639 31.1
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.9e-58 229.9 188 66.5
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 5.0e-57 226.9 538 34.6
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 3.0e-54 217.6 471 35.9
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 4.4e-53 213.8 587 31.2
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 2.9e-49 201.1 434 35.9
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 3.6e-47 194.1 225 48.0
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.1e-38 164.5 158 65.2
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.6e-37 161.4 163 57.1
Sc09g0005730 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.5e-34 151.0 109 72.5
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 2.6e-29 134.8 590 25.1
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 4.4e-29 134.0 730 23.2
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 2.7e-26 124.8 257 33.5
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 1.7e-25 122.1 299 34.4
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 5.1e-25 120.6 143 47.6
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 8.6e-25 119.8 752 23.4
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.5e-24 119.0 79 72.2
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.5e-24 118.2 84 64.3
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 3.3e-24 117.9 334 27.8
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 1.6e-23 115.5 435 29.0
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.8e-23 114.8 77 72.7
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 4.0e-22 110.9 326 31.9
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 5.2e-22 110.5 138 44.9
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 5.8e-21 107.1 164 45.1
Sc09g0005750 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.7e-20 105.5 77 76.6
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 2.2e-20 105.1 111 51.4
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 6.4e-20 103.6 276 30.8
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 2.7e-18 98.2 90 53.3
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 1.0e-17 96.3 161 36.6
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 2.3e-17 95.1 170 41.8
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 2.3e-17 95.1 386 29.3
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 1.7e-12 79.0 170 34.7
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 6.4e-12 77.0 109 43.1
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 4.2e-11 74.3 228 24.1
PGSC0003DMG400035925 Solanum tuberosum HOM05D005152 ORTHO05D006162 7.8e-10 70.1 114 36.8
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 9.6e-08 63.2 59 54.2
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 9.6e-08 63.2 125 32.8
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 8.1e-07 60.1 59 50.8


User provided reference genes

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