Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.7e-120 434.9 220 100.0
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.3e-103 377.1 217 88.0
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.5e-73 280.0 222 65.3
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.0e-34 148.3 102 66.7
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 6.3e-27 125.2 207 39.6
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 7.8e-25 118.2 200 36.0
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 7.8e-25 118.2 201 35.8
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 3.3e-23 112.8 207 36.7
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 5.6e-23 112.1 206 36.4
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 9.5e-23 111.3 185 38.4
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 9.5e-23 111.3 184 38.6
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 3.6e-22 109.4 197 36.0
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 8.9e-21 104.8 185 34.1
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 8.9e-21 104.8 185 34.1
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 1.2e-20 104.4 177 39.0
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 1.2e-20 104.4 184 37.5
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 2.0e-20 103.6 202 34.2
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 2.0e-20 103.6 192 36.5
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 2.6e-20 103.2 181 34.8
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 2.6e-20 103.2 185 34.6
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 2.6e-20 103.2 189 36.0
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 4.9e-19 99.0 176 38.1
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 6.4e-19 98.6 186 33.9
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 8.3e-19 98.2 180 35.0
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 1.1e-18 97.8 177 33.3
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 1.4e-18 97.4 199 34.2
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.2e-17 94.4 199 31.2
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.2e-17 94.4 208 32.2
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 2.7e-17 93.2 189 36.0
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 3.5e-17 92.8 166 38.0
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 4.6e-17 92.4 188 31.9
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 4.6e-17 92.4 206 31.1
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 4.6e-17 92.4 186 33.9
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 5.9e-17 92.0 206 31.1
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 5.9e-17 92.0 191 31.9
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 7.8e-17 91.7 206 32.0
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 7.8e-17 91.7 147 36.1
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 1.3e-16 90.9 204 30.4
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.7e-16 90.5 143 37.8
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.7e-16 90.5 216 32.4
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 3.0e-16 89.7 186 35.5
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 3.9e-16 89.4 177 32.2
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 5.0e-16 89.0 143 38.5
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 1.1e-15 87.8 200 31.0
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.1e-15 87.8 205 29.8
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 1.1e-15 87.8 184 34.2
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 1.5e-15 87.4 182 36.8
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 1.9e-15 87.0 146 36.3
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.9e-15 87.0 188 32.4
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.9e-15 87.0 212 31.6
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 1.9e-15 87.0 153 35.9
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 2.5e-15 86.7 180 31.1
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 4.3e-15 85.9 187 34.2
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 4.3e-15 85.9 179 37.4
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 5.6e-15 85.5 194 29.4
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 7.3e-15 85.1 212 29.2
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 7.3e-15 85.1 212 29.2
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 7.3e-15 85.1 189 31.2
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 7.3e-15 85.1 179 37.4
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 7.3e-15 85.1 202 31.2
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 7.3e-15 85.1 184 31.5
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 9.5e-15 84.7 204 30.9
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 1.6e-14 84.0 197 34.0
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 1.6e-14 84.0 155 35.5
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 2.1e-14 83.6 184 31.0
Sc09g0005730 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.6e-14 82.8 58 77.6
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 4.7e-14 82.4 212 30.2
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 4.7e-14 82.4 210 31.4
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 6.2e-14 82.0 216 28.7
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.0e-13 81.3 189 31.2
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.4e-13 80.9 161 31.7
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 1.4e-13 80.9 189 29.6
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.8e-13 80.5 167 31.1
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 1.8e-13 80.5 207 31.9
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 4.0e-13 79.3 190 28.9
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 4.0e-13 79.3 203 28.6
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 8.9e-13 78.2 171 32.7
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 8.9e-13 78.2 220 30.5
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 1.2e-12 77.8 190 31.6
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 1.5e-12 77.4 157 31.8
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 2.6e-12 76.6 198 27.8
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 3.4e-12 76.3 176 31.2
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 4.4e-12 75.9 191 31.4
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 9.8e-12 74.7 213 26.8
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 1.7e-11 73.9 190 32.6
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.9e-11 73.2 126 38.1
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 3.7e-11 72.8 199 31.2
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 3.7e-11 72.8 190 33.2
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 4.9e-11 72.4 157 31.8
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 6.4e-11 72.0 161 31.7
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 8.3e-11 71.6 169 32.0
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 8.3e-11 71.6 163 32.5
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 1.1e-10 71.2 184 32.1
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 1.1e-10 71.2 182 29.1
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.4e-10 70.9 191 30.9
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.9e-10 70.5 183 28.4
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 3.2e-10 69.7 190 30.5
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 3.2e-10 69.7 188 29.3
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 5.4e-10 68.9 189 30.7
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 1.6e-09 67.4 180 28.3
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 2.7e-09 66.6 157 31.8
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 1.3e-08 64.3 146 37.7
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 1.7e-08 63.9 168 31.5
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.3e-08 63.5 44 59.1
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 5.0e-08 62.4 137 28.5
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 9.5e-07 58.2 197 23.9
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 1.6e-06 57.4 168 30.4
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 6.2e-06 55.5 187 27.8


User provided reference genes

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