Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.0e-84 316.6 151 100.0
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.0e-27 126.3 77 79.2
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.6e-24 115.9 77 72.7
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 1.8e-20 103.2 77 63.6
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 2.3e-20 102.8 77 62.3
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.6e-19 99.4 77 61.0
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 3.3e-19 99.0 77 58.4
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 9.7e-19 97.4 77 58.4
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 1.3e-18 97.1 77 59.7
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.7e-18 96.7 77 59.7
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.7e-18 96.7 125 42.4
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.7e-18 96.7 77 57.1
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 2.2e-18 96.3 77 57.1
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 2.2e-18 96.3 77 59.7
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 2.2e-18 96.3 77 58.4
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 2.2e-18 96.3 77 57.1
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 2.8e-18 95.9 77 58.4
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 2.8e-18 95.9 77 58.4
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 3.7e-18 95.5 77 59.7
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 3.7e-18 95.5 77 58.4
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 3.7e-18 95.5 124 39.5
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 4.8e-18 95.1 65 69.2
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 4.8e-18 95.1 77 57.1
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 4.8e-18 95.1 77 57.1
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 4.8e-18 95.1 77 58.4
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 4.8e-18 95.1 69 63.8
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 4.8e-18 95.1 77 58.4
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 4.8e-18 95.1 79 57.0
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 6.3e-18 94.7 79 57.0
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 6.3e-18 94.7 79 57.0
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 6.3e-18 94.7 77 54.5
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 6.3e-18 94.7 77 57.1
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 8.2e-18 94.4 77 58.4
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 8.2e-18 94.4 65 69.2
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.1e-17 94.0 77 54.5
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 1.4e-17 93.6 77 57.1
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 1.4e-17 93.6 77 57.1
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 1.4e-17 93.6 65 64.6
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.4e-17 93.6 77 54.5
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 1.4e-17 93.6 112 43.8
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.4e-17 93.6 77 53.2
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 1.8e-17 93.2 65 66.2
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 2.4e-17 92.8 77 54.5
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 3.1e-17 92.4 77 57.1
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 4.1e-17 92.0 77 55.8
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.1e-17 92.0 56 76.8
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 4.1e-17 92.0 75 57.3
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 5.3e-17 91.7 77 54.5
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 5.3e-17 91.7 77 54.5
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 5.3e-17 91.7 69 60.9
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 5.3e-17 91.7 77 53.2
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 7.0e-17 91.3 75 57.3
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 9.1e-17 90.9 77 59.7
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 9.1e-17 90.9 112 42.9
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 9.1e-17 90.9 75 56.0
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 1.2e-16 90.5 77 51.9
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 1.2e-16 90.5 77 57.1
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.2e-16 90.5 77 55.8
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 1.2e-16 90.5 75 56.0
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.6e-16 90.1 77 54.5
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 1.6e-16 90.1 75 57.3
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.6e-16 90.1 75 57.3
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.6e-16 90.1 75 57.3
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.6e-16 90.1 75 57.3
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.6e-16 90.1 77 57.1
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 1.6e-16 90.1 69 60.9
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 1.6e-16 90.1 75 54.7
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 2.0e-16 89.7 77 55.8
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 2.0e-16 89.7 125 41.6
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 2.0e-16 89.7 77 51.9
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 2.0e-16 89.7 70 61.4
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 2.6e-16 89.4 88 53.4
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 2.6e-16 89.4 70 61.4
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 4.5e-16 88.6 116 43.1
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 4.5e-16 88.6 77 53.2
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 5.9e-16 88.2 65 58.5
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 7.7e-16 87.8 77 53.2
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 7.7e-16 87.8 77 54.5
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 1.3e-15 87.0 75 53.3
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 1.3e-15 87.0 75 53.3
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 2.9e-15 85.9 77 46.8
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 5.0e-15 85.1 65 60.0
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.5e-15 84.7 106 45.3
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 8.5e-15 84.3 77 49.4
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 8.5e-15 84.3 77 49.4
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 8.5e-15 84.3 77 49.4
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 8.5e-15 84.3 77 49.4
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 1.5e-14 83.6 75 50.7
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 2.5e-14 82.8 77 49.4
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.5e-14 82.8 82 52.4
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 3.2e-14 82.4 77 49.4
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 3.2e-14 82.4 77 50.6
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 7.2e-14 81.3 134 38.8
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 1.6e-13 80.1 79 51.9
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.6e-13 80.1 65 61.5
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 2.1e-13 79.7 77 49.4
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 2.1e-13 79.7 77 49.4
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 3.6e-13 79.0 77 46.8
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 3.6e-13 79.0 77 48.1
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 4.7e-13 78.6 77 48.1
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 6.1e-13 78.2 118 37.3
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.0e-12 77.4 59 59.3
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 1.0e-12 77.4 65 58.5
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 3.0e-12 75.9 65 58.5
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 5.2e-12 75.1 66 57.6
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.2e-11 73.9 59 57.6
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 9.7e-11 70.9 55 58.2
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.3e-09 65.1 44 59.1
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 9.1e-09 64.3 39 71.8
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 2.0e-08 63.2 56 50.0
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 2.7e-08 62.8 74 43.2
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.7e-08 62.8 48 62.5
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 5.9e-08 61.6 109 33.9
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 1.0e-07 60.8 48 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 1.3e-07 60.5 104 30.8
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 2.9e-07 59.3 56 42.9
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.8e-07 58.9 96 37.5
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.5e-07 58.2 42 54.8


User provided reference genes

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