Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.5e-181 638.6 317 100.0
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.2e-98 364.0 318 59.1
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 5.6e-93 345.1 323 55.7
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.6e-92 343.6 317 53.6
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.4e-91 340.5 321 53.6
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 5.3e-91 338.6 326 54.3
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 9.0e-91 337.8 316 53.2
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 1.5e-90 337.0 321 52.6
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 2.0e-90 336.7 318 54.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 3.4e-90 335.9 315 54.0
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.3e-89 334.0 316 54.1
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 1.7e-89 333.6 319 53.6
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 2.2e-89 333.2 320 53.1
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 8.4e-89 331.3 316 53.2
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.9e-88 330.1 320 51.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 5.4e-88 328.6 315 51.4
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 6.0e-87 325.1 319 52.4
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 7.9e-87 324.7 315 52.7
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.9e-87 324.7 320 52.2
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 1.5e-85 320.5 310 51.3
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.9e-85 320.1 316 51.3
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.9e-85 320.1 308 53.9
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 2.5e-85 319.7 306 51.3
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 4.3e-85 318.9 315 51.4
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 9.6e-85 317.8 318 50.6
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.3e-84 317.4 320 50.0
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.3e-84 317.4 318 50.6
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 1.6e-84 317.0 321 50.2
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 3.6e-84 315.8 320 48.1
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 6.2e-84 315.1 316 50.0
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 8.1e-84 314.7 320 48.8
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 1.8e-83 313.5 318 50.9
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 1.8e-83 313.5 316 48.1
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.4e-83 313.2 316 50.3
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 3.1e-83 312.8 316 50.0
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 4.0e-83 312.4 308 52.3
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 5.3e-83 312.0 308 52.6
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 6.9e-83 311.6 313 50.2
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 9.0e-83 311.2 324 48.5
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 9.0e-83 311.2 313 50.2
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.2e-82 310.8 320 50.0
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.5e-82 310.5 322 48.4
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 1.5e-82 310.5 320 48.1
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.5e-82 310.5 316 49.7
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 2.0e-82 310.1 308 52.9
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.0e-82 310.1 313 50.2
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 2.6e-82 309.7 275 53.1
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.4e-82 309.3 316 49.4
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 4.9e-81 305.4 319 49.2
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.4e-80 303.9 310 49.7
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 3.2e-80 302.8 316 48.7
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 9.3e-80 301.2 310 48.4
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.2e-79 300.8 310 48.7
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.2e-79 300.8 314 48.1
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 1.6e-79 300.4 319 49.5
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 2.1e-79 300.1 322 48.1
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 2.1e-79 300.1 322 46.9
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.0e-78 297.7 321 48.0
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 3.9e-78 295.8 318 49.7
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 3.9e-78 295.8 321 47.0
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 5.1e-78 295.4 321 47.0
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 6.7e-78 295.0 310 48.1
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 6.7e-78 295.0 307 49.2
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 1.1e-77 294.3 324 45.4
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 7.4e-77 291.6 310 48.4
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 1.6e-76 290.4 318 46.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 3.7e-76 289.3 322 47.2
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 4.8e-76 288.9 322 46.6
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 6.2e-76 288.5 298 47.3
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 8.1e-76 288.1 326 46.6
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 8.1e-76 288.1 367 42.5
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.4e-75 287.3 311 47.3
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.8e-75 287.0 310 46.5
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-75 287.0 318 45.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 2.4e-75 286.6 318 45.6
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 3.1e-75 286.2 323 48.6
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 5.3e-75 285.4 326 45.4
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 6.9e-75 285.0 325 45.5
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.2e-74 284.3 318 45.3
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.2e-74 284.3 318 45.3
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.0e-74 283.5 325 45.2
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.6e-74 283.1 311 46.9
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 2.6e-74 283.1 326 47.5
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 4.9e-73 278.9 311 46.3
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.9e-72 276.9 333 44.4
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 3.2e-72 276.2 336 45.2
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 5.5e-72 275.4 322 45.0
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 1.2e-71 274.2 333 43.5
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.0e-70 271.2 322 44.4
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 5.1e-70 268.9 319 45.1
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 3.3e-69 266.2 338 44.4
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.6e-68 263.8 332 44.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.4e-67 260.0 329 43.2
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 7.6e-66 255.0 268 48.9
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 6.5e-65 251.9 344 41.3
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 8.5e-65 251.5 249 52.6
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 8.5e-65 251.5 275 46.5
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 3.6e-63 246.1 273 45.4
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 9.1e-59 231.5 312 41.7
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 4.5e-58 229.2 217 50.7
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 7.9e-55 218.4 209 51.7
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.1e-53 214.5 179 58.7
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 3.3e-53 213.0 318 38.7
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 8.8e-46 188.3 327 36.1
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.6e-42 176.8 327 35.5
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 7.7e-42 175.3 337 35.9
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.3e-41 174.5 227 43.6
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.3e-41 174.5 256 34.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.7e-41 174.1 214 45.8
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.1e-40 171.4 330 34.2
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 1.9e-40 170.6 216 41.7
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.5e-40 169.1 205 44.4
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 7.2e-40 168.7 205 43.9
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.7e-38 162.2 211 44.1
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 5.7e-37 159.1 209 40.2
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.7e-37 159.1 225 37.8
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 5.3e-35 152.5 219 36.1
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 9.1e-35 151.8 214 38.8
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.3e-28 131.3 198 41.9
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.3e-28 128.6 153 39.9
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-27 128.3 121 48.8
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 5.5e-24 115.9 175 34.3
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 4.0e-22 109.8 116 46.6
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.5e-21 107.8 84 60.7
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 6.6e-17 92.4 129 43.4
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 2.1e-07 60.8 66 40.9


User provided reference genes

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