Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.4e-101 373.2 228 100.0
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 4.5e-44 182.2 112 83.9
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.6e-41 173.7 139 64.7
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.1e-41 173.3 140 67.9
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 8.0e-41 171.4 139 66.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 2.3e-40 169.9 140 66.4
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.0e-40 169.5 127 69.3
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.8e-40 168.3 135 68.1
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.8e-40 168.3 135 68.1
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 8.8e-40 167.9 140 66.4
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.2e-39 167.5 141 63.8
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 2.0e-39 166.8 131 67.9
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 2.0e-39 166.8 138 64.5
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 2.0e-39 166.8 128 67.2
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 3.4e-39 166.0 136 63.2
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 4.4e-39 165.6 139 64.0
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.4e-39 165.6 138 65.9
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 7.5e-39 164.9 139 64.7
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 7.5e-39 164.9 138 64.5
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 9.8e-39 164.5 140 65.0
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 9.8e-39 164.5 141 64.5
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 1.3e-38 164.1 128 65.6
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 1.3e-38 164.1 136 64.0
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.7e-38 163.7 137 67.2
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.7e-38 163.7 140 61.4
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.7e-38 163.7 139 64.7
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.2e-38 163.3 142 64.8
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 2.2e-38 163.3 137 68.6
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 2.2e-38 163.3 139 64.7
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 2.2e-38 163.3 137 65.7
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.8e-38 162.9 128 65.6
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 3.7e-38 162.5 128 65.6
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 6.3e-38 161.8 116 71.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 6.3e-38 161.8 140 60.7
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 6.3e-38 161.8 140 60.7
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.8e-37 160.2 140 64.3
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.8e-37 160.2 140 65.0
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 2.4e-37 159.8 128 66.4
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.4e-37 159.8 134 65.7
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 2.4e-37 159.8 140 65.0
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.4e-37 159.8 110 72.7
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 3.1e-37 159.5 133 65.4
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 4.1e-37 159.1 142 63.4
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 4.1e-37 159.1 130 65.4
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 7.0e-37 158.3 190 62.1
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 7.0e-37 158.3 130 65.4
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 7.0e-37 158.3 136 61.0
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.6e-36 157.1 188 63.3
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.6e-36 157.1 129 64.3
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.7e-36 156.4 133 63.9
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 3.5e-36 156.0 188 56.4
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 3.5e-36 156.0 136 63.2
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 3.5e-36 156.0 131 62.6
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 3.5e-36 156.0 131 62.6
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 4.5e-36 155.6 128 66.4
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 7.7e-36 154.8 140 64.3
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.0e-35 154.5 134 62.7
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 1.7e-35 153.7 136 61.0
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.9e-35 152.9 137 62.8
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 3.8e-35 152.5 156 53.2
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 8.6e-35 151.4 138 62.3
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.1e-34 151.0 148 57.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.1e-34 151.0 113 71.7
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.1e-34 151.0 90 82.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.9e-34 150.2 140 58.6
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 3.3e-34 149.4 140 60.0
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 3.3e-34 149.4 140 60.0
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 4.2e-34 149.1 139 60.4
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 7.2e-34 148.3 112 68.8
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.5e-34 147.9 141 60.3
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 9.5e-34 147.9 143 58.7
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 1.6e-33 147.1 146 58.2
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.6e-33 147.1 139 59.7
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 2.1e-33 146.7 143 61.5
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 2.1e-33 146.7 143 61.5
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 2.8e-33 146.4 142 59.2
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 4.7e-33 145.6 92 81.5
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 6.1e-33 145.2 141 59.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 8.0e-33 144.8 132 60.6
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 8.0e-33 144.8 139 58.3
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 8.0e-33 144.8 128 62.5
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 1.4e-32 144.1 138 55.1
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 1.4e-32 144.1 138 55.1
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 4.0e-32 142.5 132 62.1
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 5.2e-32 142.1 104 73.1
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.2e-31 141.0 138 60.1
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 1.5e-31 140.6 103 72.8
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.4e-31 139.0 134 60.4
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 5.7e-31 138.7 105 72.4
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 3.7e-30 136.0 128 59.4
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 6.3e-30 135.2 100 70.0
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-29 134.0 123 62.6
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-29 134.0 123 62.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 7.0e-29 131.7 144 53.5
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 3.5e-28 129.4 231 50.2
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 4.6e-28 129.0 140 53.6
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.4e-24 117.5 105 63.8
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.8e-24 117.1 155 47.1
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.4e-21 106.7 80 71.2
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 3.0e-19 99.8 106 57.5
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 8.6e-19 98.2 90 60.0
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 4.0e-16 89.4 139 39.6
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 5.2e-16 89.0 147 43.5
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 8.9e-16 88.2 145 40.0
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 4.9e-14 82.4 143 39.9
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 1.9e-13 80.5 63 65.1
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 1.1e-10 71.2 37 91.9
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 3.3e-10 69.7 47 70.2
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.4e-08 64.3 92 41.3
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 4.0e-08 62.8 106 40.6
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.4e-07 59.3 59 52.5
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 5.8e-07 58.9 125 42.4


User provided reference genes

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