Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 3.3e-127 458.4 227 100.0
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.1e-95 353.6 228 74.6
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 2.0e-92 342.8 211 75.4
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.4e-92 342.0 211 75.4
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 3.4e-92 342.0 226 72.1
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 3.8e-91 338.6 228 72.8
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.4e-90 336.7 211 74.4
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.1e-90 334.3 228 72.4
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.1e-90 334.3 228 72.4
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.2e-89 333.6 228 70.6
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.6e-89 333.2 210 72.4
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.1e-89 332.8 217 71.9
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-88 329.7 228 71.9
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 8.7e-88 327.4 211 71.6
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 1.1e-87 327.0 217 71.0
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 1.5e-87 326.6 211 73.5
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.9e-87 326.2 211 74.4
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 2.5e-87 325.9 228 67.5
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.5e-87 325.9 211 73.5
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 4.3e-87 325.1 228 68.9
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 4.3e-87 325.1 211 73.5
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 5.6e-87 324.7 211 72.0
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 7.3e-87 324.3 228 69.3
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 7.3e-87 324.3 228 68.4
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 7.3e-87 324.3 211 73.0
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 9.6e-87 323.9 228 67.5
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 9.6e-87 323.9 228 69.3
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.3e-86 323.6 211 71.1
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 1.6e-86 323.2 211 71.6
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.6e-86 323.2 228 69.3
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.6e-86 323.2 211 73.9
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.8e-86 322.4 228 68.0
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.6e-86 322.0 228 68.4
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 4.8e-86 321.6 211 71.1
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 4.8e-86 321.6 211 72.5
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 6.2e-86 321.2 217 68.7
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 8.1e-86 320.9 228 67.1
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 8.1e-86 320.9 211 73.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.1e-85 320.5 211 71.6
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 1.8e-85 319.7 211 72.0
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.4e-85 319.3 211 72.5
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 9.0e-85 317.4 213 72.8
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-84 317.0 211 71.1
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.2e-84 317.0 211 70.1
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 4.5e-84 315.1 209 70.3
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 5.8e-84 314.7 211 71.1
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 5.8e-84 314.7 211 69.7
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 7.6e-84 314.3 211 69.2
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 7.6e-84 314.3 211 69.2
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 9.9e-84 313.9 207 71.5
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.9e-84 313.9 228 66.2
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 9.9e-84 313.9 211 71.1
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.9e-84 313.9 211 67.3
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.9e-84 313.9 211 67.3
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.3e-83 313.5 228 66.7
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-83 313.5 228 67.1
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.7e-83 313.2 211 69.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 1.7e-83 313.2 211 70.6
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 2.2e-83 312.8 211 68.7
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.2e-83 312.8 211 68.2
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 3.8e-83 312.0 219 69.4
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 3.8e-83 312.0 211 69.2
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.8e-83 312.0 211 69.2
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 3.8e-83 312.0 211 70.1
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 4.9e-83 311.6 211 70.1
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 6.4e-83 311.2 211 67.8
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 6.4e-83 311.2 211 67.8
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 8.4e-83 310.8 211 67.3
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 8.4e-83 310.8 239 63.6
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.1e-82 310.5 211 67.8
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.1e-82 310.5 211 67.8
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.4e-82 310.1 211 68.2
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.4e-82 310.1 228 64.9
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.9e-82 309.7 211 67.3
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.4e-82 309.3 228 65.8
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.4e-82 309.3 211 68.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 4.2e-82 308.5 211 67.3
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 5.4e-82 308.1 227 67.0
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 9.3e-82 307.4 211 66.8
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 9.3e-82 307.4 211 66.8
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 1.6e-81 306.6 211 66.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 2.1e-81 306.2 211 68.7
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 2.7e-81 305.8 211 65.9
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.7e-81 305.8 211 68.2
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 4.6e-81 305.1 211 65.9
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 6.7e-80 301.2 217 65.4
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 6.7e-80 301.2 228 64.0
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 8.7e-80 300.8 228 64.0
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.6e-78 296.6 228 62.7
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.6e-78 296.6 228 62.7
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 2.1e-78 296.2 273 56.0
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.1e-78 296.2 250 60.0
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.8e-78 295.8 210 69.5
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 4.8e-78 295.0 211 68.2
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 9.0e-77 290.8 212 64.6
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.2e-76 290.4 211 62.6
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.6e-76 289.3 257 56.8
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 4.9e-75 285.0 183 73.2
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 4.6e-73 278.5 195 66.2
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.3e-72 276.9 228 60.5
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 3.9e-72 275.4 205 64.9
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.9e-72 275.4 211 63.5
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 5.5e-66 255.0 181 66.9
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 9.3e-66 254.2 152 78.3
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.2e-62 243.0 228 55.7
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 4.1e-61 238.8 211 55.0
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 9.4e-58 227.6 206 54.4
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.9e-57 224.6 148 72.3
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 3.9e-56 222.2 228 53.5
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.3e-54 217.2 208 53.4
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.8e-54 216.1 146 71.9
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.9e-50 203.4 205 50.7
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.6e-49 200.3 216 47.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.1e-42 177.6 205 44.4
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 7.5e-39 164.9 149 57.7
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.2e-36 157.5 187 48.7
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.2e-35 153.3 215 39.1
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.9e-34 150.2 149 53.7
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 6.1e-33 145.2 225 39.1
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.2e-28 131.0 111 57.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.0e-28 130.2 100 62.0
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.6e-19 98.2 102 51.0
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.1e-18 97.8 58 74.1
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.5e-15 87.4 67 61.2
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.4e-15 85.9 63 58.7


User provided reference genes

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