Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.7e-263 912.1 476 100.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.6e-155 553.5 472 63.3
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 8.6e-154 547.7 504 60.9
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.3e-149 533.9 479 61.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 6.4e-149 531.6 480 61.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.6e-147 526.9 479 62.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.5e-147 525.8 480 60.8
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.3e-146 523.9 486 62.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.3e-145 518.1 472 59.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.3e-145 518.1 472 59.5
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 8.0e-144 514.6 475 60.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.1e-143 512.7 481 59.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-142 510.8 474 59.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 9.8e-142 507.7 474 59.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 9.8e-142 507.7 483 58.0
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.2e-141 506.5 479 59.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.9e-140 503.4 464 60.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 5.4e-140 501.9 476 58.6
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 4.6e-139 498.8 474 58.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.0e-139 498.4 472 58.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 7.8e-139 498.0 477 58.1
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-138 497.7 473 58.4
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.0e-138 495.4 480 57.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.0e-138 495.4 473 57.9
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 8.6e-138 494.6 471 58.8
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.6e-138 494.6 475 57.9
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-137 494.2 473 57.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.5e-137 493.8 482 57.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.3e-137 492.7 483 56.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.3e-137 491.5 474 56.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.8e-136 489.6 477 57.0
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.7e-136 488.8 476 58.4
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 6.2e-136 488.4 471 57.1
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 8.1e-136 488.0 478 59.2
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.1e-136 488.0 474 56.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 3.1e-135 486.1 535 54.4
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 4.0e-135 485.7 477 57.4
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.5e-134 483.8 482 57.7
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.6e-134 483.0 476 56.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 4.4e-134 482.3 476 57.8
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.8e-134 481.9 478 58.6
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 7.5e-134 481.5 478 58.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.9e-133 478.8 477 56.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.4e-133 478.4 477 58.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-132 477.6 472 57.8
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.6e-130 468.0 471 54.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 8.6e-130 468.0 472 57.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.5e-129 466.5 483 55.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.2e-128 464.2 477 56.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.1e-127 461.1 474 55.9
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.4e-127 460.7 477 56.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.8e-127 460.3 475 55.8
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 3.4e-126 456.1 477 54.1
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 9.9e-126 454.5 475 53.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-124 451.1 473 55.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.4e-124 450.7 473 55.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 5.4e-124 448.7 471 54.6
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.2e-123 447.6 474 54.2
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.6e-123 445.7 471 55.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.6e-123 445.7 481 53.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.9e-121 440.3 488 51.0
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.5e-121 439.9 475 53.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.5e-121 439.9 547 50.3
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.3e-121 439.5 486 55.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 5.6e-121 438.7 600 45.2
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.1e-120 436.8 474 53.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 3.1e-119 433.0 485 51.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 8.9e-119 431.4 477 52.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.4e-116 422.2 438 56.6
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.0e-114 417.9 489 48.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 3.6e-112 409.5 493 49.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.2e-112 408.7 473 51.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 6.2e-112 408.7 480 51.0
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 8.1e-112 408.3 455 50.1
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.4e-111 407.5 486 48.1
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.4e-111 406.8 455 50.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.4e-111 406.8 498 49.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.0e-111 404.8 483 48.2
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-110 404.4 484 50.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.5e-110 404.1 418 53.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.5e-110 404.1 482 50.0
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.6e-110 403.3 352 61.1
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.4e-110 402.9 485 50.5
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.4e-110 402.9 486 48.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.5e-110 402.5 470 49.1
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 7.6e-110 401.7 508 48.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.3e-109 401.0 486 49.6
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.3e-109 401.0 501 46.3
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.7e-109 400.6 478 49.6
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.2e-108 396.4 475 49.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 7.1e-108 395.2 469 48.8
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.1e-107 393.7 478 47.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.7e-107 393.3 485 48.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.6e-107 392.5 486 46.7
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.9e-107 391.7 486 47.3
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 7.9e-107 391.7 486 47.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 7.9e-107 391.7 478 47.3
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.0e-106 391.3 493 48.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 3.0e-106 389.8 464 50.0
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.9e-106 389.4 468 47.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.1e-105 387.9 484 49.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.5e-105 387.5 477 47.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.6e-105 384.8 486 45.5
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.6e-105 384.8 484 48.6
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.6e-105 384.8 484 49.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 9.6e-105 384.8 481 47.8
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 9.6e-105 384.8 481 47.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 6.2e-104 382.1 479 46.6
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 6.2e-104 382.1 482 51.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.4e-103 380.2 479 46.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.0e-103 379.4 471 49.5
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.2e-102 377.9 491 46.4
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.6e-102 376.7 483 46.2
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 3.4e-102 376.3 474 48.3
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 7.6e-102 375.2 418 48.3
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 3.5e-99 366.3 471 48.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-97 361.3 370 55.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 5.6e-97 359.0 468 47.0
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.7e-96 356.3 472 44.1
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.7e-96 356.3 484 44.6
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.6e-94 350.1 477 46.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 5.8e-94 349.0 425 48.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.2e-92 342.8 311 57.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.8e-90 337.4 285 62.8
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-86 324.7 462 43.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.0e-86 323.9 467 44.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-86 323.2 495 41.2
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 3.8e-85 319.7 374 52.9
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.6e-83 314.3 379 48.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.0e-82 310.1 426 43.4
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.9e-82 309.7 459 44.4
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 5.1e-82 309.3 368 46.2
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 6.7e-82 308.9 469 41.8
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-80 304.3 443 42.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.1e-79 299.7 412 43.7
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.0e-77 292.7 368 46.2
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 6.1e-75 285.8 373 47.7
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.0e-74 283.5 335 50.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.4e-73 279.6 369 44.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 9.7e-73 278.5 308 50.3
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.8e-72 276.9 476 38.2
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-71 274.2 316 45.6
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.9e-71 272.3 316 45.6
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 9.1e-71 271.9 368 44.0
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.2e-67 261.5 319 46.1
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-67 260.8 220 59.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 6.1e-67 259.2 253 52.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.6e-62 243.8 315 41.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.5e-60 238.0 306 41.5
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.2e-60 236.9 395 38.7
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.2e-59 235.0 361 42.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-56 224.9 349 39.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.2e-56 224.2 508 33.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 8.2e-56 222.2 268 42.9
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 9.1e-55 218.8 146 74.0
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.8e-50 204.5 404 37.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.6e-49 200.7 308 41.6
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.6e-49 200.7 215 51.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 7.5e-49 199.1 335 39.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.7e-48 196.8 245 46.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 6.3e-48 196.1 280 42.1
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-45 188.3 263 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.8e-45 186.8 429 33.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-36 157.9 145 54.5
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.2e-34 149.8 104 72.1
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.5e-33 148.3 223 44.8
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.4e-33 147.1 269 37.2
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.2e-31 140.6 108 67.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.3e-24 118.6 202 38.1
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.4e-23 113.2 190 40.0
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 5.4e-23 113.2 196 35.7
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.7e-22 110.9 71 71.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.0e-21 107.5 86 60.5
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.9e-20 104.8 80 60.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.6e-17 94.4 94 54.3
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 2.1e-14 84.7 126 42.1
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.9e-13 80.5 62 59.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 9.5e-12 75.9 52 69.2
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 8.9e-10 69.3 76 63.2
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 1.6e-06 58.5 34 79.4


User provided reference genes

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