Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 7.5e-298 1026.5 567 100.0
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 9.7e-96 355.1 600 43.3
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 2.1e-90 337.4 601 42.6
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.7e-87 327.8 600 41.2
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 4.5e-85 319.7 595 41.5
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 8.5e-84 315.5 598 40.8
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.5e-80 302.4 603 39.0
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 3.1e-78 297.0 608 40.5
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 5.9e-77 292.7 608 39.0
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.2e-74 285.0 603 39.1
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 2.1e-74 284.3 562 40.7
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 1.8e-73 281.2 562 40.7
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 8.8e-73 278.9 606 37.8
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 1.5e-72 278.1 618 41.1
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.4e-72 276.9 579 38.0
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 3.4e-72 276.9 579 38.0
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 5.7e-72 276.2 599 39.7
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 2.2e-71 274.2 616 38.6
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.7e-71 273.5 618 37.2
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 6.3e-71 272.7 589 39.2
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.4e-70 271.6 615 37.6
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 2.9e-68 263.8 609 38.1
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.0e-68 263.1 606 38.8
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 1.1e-67 261.9 618 36.9
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 1.5e-67 261.5 606 38.8
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 4.3e-67 260.0 588 39.1
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 5.6e-67 259.6 584 38.7
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 5.6e-67 259.6 585 39.5
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 2.8e-66 257.3 588 36.9
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 3.6e-66 256.9 371 46.1
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 6.1e-66 256.1 604 37.9
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 6.1e-66 256.1 582 38.7
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.0e-65 255.4 618 37.2
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 4.0e-65 253.4 572 38.1
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 4.4e-64 250.0 603 37.6
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 4.4e-64 250.0 579 37.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 1.3e-63 248.4 604 37.1
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 8.3e-63 245.7 591 37.1
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 8.3e-63 245.7 596 38.4
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.1e-62 245.4 600 36.8
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 3.2e-62 243.8 611 37.5
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 1.2e-61 241.9 529 38.2
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.6e-61 240.0 582 37.6
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 5.9e-61 239.6 594 35.9
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 1.7e-60 238.0 579 37.1
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 1.5e-59 235.0 595 37.0
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 5.6e-59 233.0 580 34.3
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 2.1e-58 231.1 580 36.6
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 3.6e-58 230.3 601 36.4
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.4e-57 228.4 584 36.3
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 2.3e-57 227.6 535 37.4
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 4.0e-57 226.9 610 34.8
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 2.0e-56 224.6 588 36.1
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 3.4e-56 223.8 535 36.6
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 4.4e-56 223.4 561 36.4
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 7.5e-56 222.6 630 34.8
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.9e-55 220.7 585 36.1
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 8.3e-55 219.2 599 34.7
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 1.2e-53 215.3 584 34.4
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 3.9e-52 210.3 488 37.1
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.9e-51 208.0 611 36.5
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 3.3e-51 207.2 617 33.5
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 4.3e-51 206.8 531 36.9
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 8.9e-49 199.1 599 33.9
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 4.4e-48 196.8 610 33.8
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 4.4e-48 196.8 363 41.6
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 1.7e-47 194.9 585 34.2
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 3.2e-46 190.7 535 34.8
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 9.2e-46 189.1 571 33.8
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 2.7e-45 187.6 569 33.2
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 2.7e-45 187.6 602 32.1
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 8.6e-44 182.6 571 32.9
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.9e-43 181.4 402 40.0
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 5.6e-43 179.9 581 32.0
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 2.8e-42 177.6 451 36.6
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 7.6e-40 169.5 623 32.4
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 2.2e-39 167.9 278 41.0
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 4.1e-38 163.7 577 30.7
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.6e-36 156.4 396 39.4
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.6e-36 156.4 396 39.4
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 1.2e-34 152.1 133 62.4
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 4.7e-34 150.2 587 31.7
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 4.2e-30 137.1 262 38.2
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 3.3e-27 127.5 557 29.4
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 7.3e-27 126.3 423 33.8
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 2.9e-23 114.4 332 35.2
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.5e-21 107.5 130 50.8
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 5.1e-20 103.6 212 36.8
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 5.1e-20 103.6 212 36.8
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 6.6e-20 103.2 281 35.9
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 1.5e-19 102.1 265 34.0
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 1.9e-19 101.7 346 34.4
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 7.4e-19 99.8 282 36.2
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 7.4e-19 99.8 387 31.3
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 1.6e-18 98.6 422 29.9
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.1e-18 98.2 279 35.5
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 9.0e-17 92.8 297 33.3
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 9.0e-17 92.8 194 36.6
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.6e-16 91.3 633 26.1
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 3.2e-14 84.3 269 34.2
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.2e-14 84.0 93 53.8
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 2.1e-13 81.6 463 27.6
Mapoly0040s0042 Marchantia polymorpha HOM05D024742 ORTHO05D030099 6.0e-13 80.1 230 30.9
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 1.8e-12 78.6 597 26.0
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.3e-12 78.2 397 25.4
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 3.9e-12 77.4 612 26.6
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 6.7e-12 76.6 149 35.6
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.1e-11 75.9 468 25.2
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 1.1e-11 75.9 287 31.4
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 1.1e-11 75.9 287 31.4
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 7.4e-11 73.2 201 36.3
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 2.1e-10 71.6 453 27.4
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 3.7e-10 70.9 593 25.5
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 4.8e-10 70.5 192 31.8
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 6.2e-10 70.1 615 24.4
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 6.2e-10 70.1 403 24.8
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 8.1e-10 69.7 646 25.4
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 1.1e-09 69.3 391 25.1
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.1e-09 69.3 616 25.2
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 3.1e-09 67.8 285 28.8
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 5.3e-09 67.0 470 24.7
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-08 65.9 615 25.2
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.2e-08 65.9 196 33.2
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 1.5e-08 65.5 436 25.7
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.5e-08 65.5 612 23.9
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.5e-08 65.5 591 25.7
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.0e-08 65.1 601 24.8
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 2.0e-08 65.1 240 29.6
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 2.6e-08 64.7 602 24.3
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 5.8e-08 63.5 444 28.8
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 5.8e-08 63.5 357 25.5
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 7.6e-08 63.2 444 25.0
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 7.6e-08 63.2 607 24.7
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 1.3e-07 62.4 183 30.1
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.7e-07 62.0 600 25.3
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.7e-07 62.0 247 30.0
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 2.2e-07 61.6 603 23.9
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.9e-07 61.2 410 24.6
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 2.9e-07 61.2 614 24.8
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 3.8e-07 60.8 292 27.1
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 4.9e-07 60.5 97 47.4
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 4.9e-07 60.5 106 37.7
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 6.5e-07 60.1 108 38.0
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 8.4e-07 59.7 97 47.4
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 8.4e-07 59.7 97 47.4
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 8.4e-07 59.7 459 24.8
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 1.1e-06 59.3 97 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3581 Anthoceros agrestis HOM05D024742 ORTHO05D008955 2.5e-06 58.2 272 26.1
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 2.5e-06 58.2 266 28.6
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 2.5e-06 58.2 624 23.7
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 2.5e-06 58.2 268 25.7
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 2.5e-06 58.2 612 24.7
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.2e-06 57.8 613 24.8
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 3.2e-06 57.8 370 26.2
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 4.2e-06 57.4 144 35.4
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 4.2e-06 57.4 591 23.4
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 4.2e-06 57.4 110 37.3
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 5.5e-06 57.0 613 22.8
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 5.5e-06 57.0 241 27.8
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 7.1e-06 56.6 246 29.7
Cpa.g.sc54.32 Carica papaya HOM05D007286 ORTHO05D008955 7.1e-06 56.6 128 29.7


User provided reference genes

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