Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 0.0e+00 1149.4 672 100.0
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 2.6e-108 397.1 654 43.9
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.6e-100 370.5 700 41.1
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 5.9e-100 369.4 648 42.3
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 5.0e-99 366.3 697 40.3
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 8.3e-70 269.2 691 35.2
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 7.8e-60 236.1 448 41.3
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 4.3e-58 230.3 714 33.5
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 5.6e-58 229.9 658 34.5
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 1.2e-57 228.8 437 38.9
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 4.7e-57 226.9 601 34.4
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 1.8e-56 224.9 650 34.0
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 2.9e-54 217.6 496 35.3
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 4.1e-53 213.8 411 40.9
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 5.4e-53 213.4 366 41.5
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 2.1e-52 211.5 439 40.1
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 1.7e-51 208.4 687 31.3
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 2.3e-51 208.0 632 33.5
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 1.2e-49 202.2 355 43.1
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 2.8e-49 201.1 455 38.9
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 6.2e-49 199.9 429 38.9
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 5.2e-48 196.8 499 34.1
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 1.5e-47 195.3 448 37.5
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 2.6e-47 194.5 442 38.7
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 7.6e-47 193.0 224 51.8
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 7.6e-47 193.0 446 37.9
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 9.9e-47 192.6 419 37.9
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.3e-46 192.2 469 36.7
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 2.9e-46 191.0 207 53.1
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 1.1e-45 189.1 517 35.6
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.4e-45 188.7 419 37.5
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 1.9e-45 188.3 419 37.5
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 2.4e-45 188.0 354 40.1
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.4e-45 188.0 428 37.6
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 7.1e-45 186.4 476 35.7
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 9.2e-45 186.0 418 37.3
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 1.6e-44 185.3 437 34.8
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 2.1e-44 184.9 522 33.9
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 4.6e-44 183.7 428 37.1
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 4.6e-44 183.7 428 37.6
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 1.7e-43 181.8 447 36.2
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 2.3e-43 181.4 682 30.8
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 3.0e-43 181.0 727 30.0
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 3.9e-43 180.6 443 37.0
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 1.1e-42 179.1 431 37.4
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.5e-42 178.7 625 31.0
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 2.1e-41 174.9 400 36.5
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 6.2e-41 173.3 428 36.7
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 8.1e-41 172.9 443 35.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 1.8e-40 171.8 490 34.3
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 1.8e-40 171.8 438 35.6
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.4e-40 171.4 671 29.2
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 5.2e-40 170.2 520 32.7
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 9.0e-40 169.5 223 46.6
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 2.0e-39 168.3 746 30.3
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 7.6e-39 166.4 254 41.3
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 2.2e-38 164.9 400 37.2
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 2.2e-38 164.9 510 33.7
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 2.9e-38 164.5 510 35.5
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 3.8e-38 164.1 199 48.7
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 4.9e-38 163.7 412 36.4
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 1.9e-37 161.8 446 34.1
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 5.4e-37 160.2 419 35.8
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 1.2e-36 159.1 414 34.3
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 1.6e-36 158.7 455 33.2
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 7.8e-36 156.4 629 34.2
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 1.0e-35 156.0 442 33.5
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 1.3e-35 155.6 461 35.6
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 1.7e-35 155.2 407 34.6
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 5.1e-35 153.7 370 35.9
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 1.1e-34 152.5 249 42.6
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 1.5e-34 152.1 244 42.2
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 1.5e-34 152.1 413 34.1
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 1.5e-34 152.1 231 39.0
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.5e-34 151.4 338 34.0
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 4.3e-34 150.6 638 29.6
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 7.3e-34 149.8 399 34.1
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 7.3e-34 149.8 452 35.0
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 9.6e-34 149.4 359 35.9
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 1.6e-33 148.7 339 39.8
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 4.8e-33 147.1 406 33.7
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 6.2e-33 146.7 404 34.2
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 8.1e-33 146.4 379 35.6
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 2.4e-32 144.8 544 29.0
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 6.9e-32 143.3 592 28.4
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 9.0e-32 142.9 497 31.0
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 4.5e-31 140.6 519 31.6
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 2.7e-28 131.3 409 32.3
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.7e-28 131.3 355 34.6
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 3.5e-28 131.0 482 32.8
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 6.0e-28 130.2 412 33.3
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 1.3e-27 129.0 525 30.5
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.8e-27 128.6 410 31.5
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 3.9e-27 127.5 466 32.8
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 5.1e-27 127.1 594 28.5
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 6.7e-27 126.7 194 45.4
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 1.6e-25 122.1 458 33.2
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 1.6e-25 122.1 433 30.5
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 3.8e-22 110.9 223 37.2
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 1.4e-16 92.4 291 29.6
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 9.0e-16 89.7 397 28.2
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 1.9e-10 72.0 380 29.5
AagrBONN_evm.TU.Sc2ySwM_344.1162 Anthoceros agrestis HOM05D006718 ORTHO05D008492 2.5e-10 71.6 319 26.3
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 3.1e-08 64.7 266 27.1
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 1.3e-06 59.3 148 27.7


User provided reference genes

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