Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 1.7e-88 329.3 171 100.0
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 9.6e-39 164.1 151 61.6
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 5.8e-36 154.8 92 83.7
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 1.3e-35 153.7 92 84.8
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 1.3e-35 153.7 99 78.8
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 1.7e-35 153.3 92 84.8
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 2.9e-35 152.5 99 79.8
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 2.9e-35 152.5 93 82.8
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 4.9e-35 151.8 92 83.7
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 4.9e-35 151.8 93 82.8
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 8.4e-35 151.0 93 80.6
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 8.4e-35 151.0 90 84.4
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 1.1e-34 150.6 99 76.8
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 1.1e-34 150.6 94 80.9
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 1.9e-34 149.8 96 79.2
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 1.9e-34 149.8 99 75.8
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 2.4e-34 149.4 92 80.4
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 3.2e-34 149.1 92 81.5
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 3.2e-34 149.1 93 79.6
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 3.2e-34 149.1 93 79.6
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 3.2e-34 149.1 93 79.6
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.2e-34 149.1 92 80.4
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.2e-34 149.1 92 80.4
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.2e-34 149.1 92 80.4
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.2e-34 149.1 92 80.4
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 4.2e-34 148.7 97 76.3
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 4.2e-34 148.7 97 76.3
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 4.2e-34 148.7 99 75.8
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 5.4e-34 148.3 92 82.6
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 5.4e-34 148.3 92 81.5
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 5.4e-34 148.3 92 81.5
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 5.4e-34 148.3 92 80.4
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 7.1e-34 147.9 92 80.4
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 7.1e-34 147.9 94 78.7
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 7.1e-34 147.9 92 81.5
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 9.3e-34 147.5 92 81.5
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 9.3e-34 147.5 97 75.3
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 9.3e-34 147.5 108 71.3
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 1.2e-33 147.1 91 81.3
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 1.2e-33 147.1 97 75.3
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 1.6e-33 146.7 96 76.0
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.6e-33 146.7 99 74.7
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 1.6e-33 146.7 99 74.7
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.1e-33 146.4 97 75.3
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 2.1e-33 146.4 91 81.3
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 2.1e-33 146.4 92 80.4
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 4.6e-33 145.2 99 73.7
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 1.0e-32 144.1 94 74.5
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.0e-32 144.1 116 64.7
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 1.7e-32 143.3 92 77.2
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 2.3e-32 142.9 91 79.1
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 2.3e-32 142.9 92 78.3
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 3.9e-32 142.1 92 77.2
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 3.9e-32 142.1 92 78.3
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 5.1e-32 141.7 92 77.2
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 5.1e-32 141.7 92 77.2
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 5.1e-32 141.7 89 82.0
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 5.1e-32 141.7 91 78.0
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 5.1e-32 141.7 100 69.0
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 6.6e-32 141.4 94 75.5
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 8.7e-32 141.0 99 73.7
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 1.1e-31 140.6 91 76.9
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.5e-31 140.2 95 73.7
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 1.5e-31 140.2 93 75.3
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 1.5e-31 140.2 92 73.9
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 3.3e-31 139.0 92 75.0
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 4.3e-31 138.7 92 75.0
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 4.3e-31 138.7 92 75.0
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 4.3e-31 138.7 92 75.0
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 4.3e-31 138.7 92 75.0
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 5.6e-31 138.3 135 60.7
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 9.6e-31 137.5 93 74.2
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 1.3e-30 137.1 92 73.9
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 3.6e-30 135.6 88 78.4
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 3.6e-30 135.6 163 50.3
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 3.6e-30 135.6 98 70.4
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 3.6e-30 135.6 97 66.0
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 8.1e-30 134.4 93 71.0
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 2.4e-29 132.9 91 71.4
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 4.9e-27 125.2 97 61.9
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 1.9e-26 123.2 101 58.4
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 2.4e-26 122.9 72 81.9
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 4.6e-25 118.6 71 80.3
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 1.8e-24 116.7 90 64.4
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 3.3e-23 112.5 91 63.7
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 1.6e-22 110.2 95 58.9
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.2e-20 104.0 92 62.0
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.5e-20 103.6 92 63.0
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 2.0e-20 103.2 97 59.8
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 1.4e-18 97.1 61 80.3
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 6.0e-17 91.7 60 78.3
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.3e-15 85.9 60 75.0
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.8e-13 80.1 52 80.8
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.1e-13 79.3 51 80.4
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.0e-12 76.6 97 49.5
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 2.2e-11 73.2 51 74.5
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 2.9e-11 72.8 60 65.0
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 2.9e-11 72.8 93 44.1
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 1.9e-10 70.1 40 85.0
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 5.5e-10 68.6 42 85.7
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 7.1e-10 68.2 86 43.0
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.1e-08 62.0 92 43.5
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 4.3e-07 58.9 99 39.4
COL.COLO4_34141 Corchorus olitorius HOM05D009116 ORTHO05D011299 1.3e-06 57.4 96 33.3
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 2.8e-06 56.2 93 34.4
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 4.8e-06 55.5 96 33.3
Nn1g02040 Nelumbo nucifera HOM05D009116 ORTHO05D011299 8.2e-06 54.7 99 34.3
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 8.2e-06 54.7 85 35.3


User provided reference genes

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