Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 6.7e-78 293.9 144 100.0
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 7.7e-66 253.8 140 85.0
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 6.5e-65 250.8 135 85.2
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.6e-63 246.1 137 81.8
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.1e-63 245.7 140 80.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.8e-63 245.4 141 80.9
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 2.8e-63 245.4 135 83.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.7e-63 244.6 141 78.0
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 6.1e-63 244.2 141 78.7
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 8.0e-63 243.8 141 81.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.8e-62 242.7 140 80.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 3.0e-62 241.9 137 80.3
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 4.0e-62 241.5 143 80.4
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 5.2e-62 241.1 140 80.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 6.8e-62 240.7 142 78.9
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.5e-61 239.6 142 78.9
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 4.4e-61 238.0 141 78.7
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 5.7e-61 237.7 140 76.4
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 9.8e-61 236.9 142 78.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 2.2e-60 235.7 140 77.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.7e-60 235.0 140 76.4
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 4.9e-60 234.6 140 77.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.9e-60 234.6 138 78.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 4.9e-60 234.6 139 74.8
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 8.3e-60 233.8 137 80.3
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.1e-59 233.4 141 75.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.4e-59 233.0 138 77.5
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.4e-59 233.0 138 77.5
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.4e-59 233.0 140 75.7
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.4e-59 233.0 137 80.3
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.4e-59 233.0 140 75.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.8e-59 232.6 140 73.6
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.1e-59 231.9 140 76.4
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.1e-59 231.5 137 79.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.1e-59 231.5 137 79.6
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 5.4e-59 231.1 140 75.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 5.4e-59 231.1 144 75.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.0e-59 230.7 140 75.7
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 7.0e-59 230.7 137 75.9
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.2e-59 230.3 141 75.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-58 229.9 141 75.9
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.2e-58 229.9 141 75.9
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.6e-58 229.6 140 74.3
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.0e-58 229.2 140 74.3
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.5e-58 228.4 137 76.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 4.5e-58 228.0 137 76.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 5.9e-58 227.6 140 74.3
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 5.9e-58 227.6 140 74.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 7.8e-58 227.3 140 74.3
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 7.8e-58 227.3 139 77.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.3e-57 226.5 137 75.9
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.9e-57 225.3 140 74.3
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 3.8e-57 224.9 145 72.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.0e-57 224.6 137 75.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 5.0e-57 224.6 138 76.8
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 5.0e-57 224.6 137 77.4
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 6.6e-57 224.2 139 76.3
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 8.6e-57 223.8 139 75.5
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.6e-57 223.8 139 75.5
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.5e-56 223.0 139 75.5
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.9e-56 222.6 157 68.8
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 75.5
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 74.8
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 3.3e-56 221.9 141 70.2
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 3.3e-56 221.9 138 75.4
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 4.3e-56 221.5 119 87.4
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.2e-55 219.9 141 72.3
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.2e-55 219.9 141 68.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 6.1e-55 217.6 142 74.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 6.1e-55 217.6 135 76.3
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 8.0e-55 217.2 156 66.7
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 8.0e-55 217.2 138 74.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 8.0e-55 217.2 138 74.6
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 8.0e-55 217.2 138 74.6
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.0e-54 216.9 139 71.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.0e-54 216.9 139 76.3
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.3e-54 215.7 168 64.3
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.0e-54 215.3 142 70.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 3.0e-54 215.3 135 74.1
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 3.0e-54 215.3 141 72.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 4.0e-54 214.9 138 73.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.0e-54 214.9 143 72.0
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 5.2e-54 214.5 141 70.9
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.2e-54 214.5 142 69.7
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.6e-53 212.2 141 69.5
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.6e-53 212.2 142 69.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 3.4e-53 211.8 142 71.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.4e-53 211.5 138 70.3
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.4e-53 211.5 139 73.4
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.9e-52 208.8 138 70.3
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 3.7e-52 208.4 139 69.8
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 6.4e-52 207.6 115 80.0
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.4e-52 207.6 128 75.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 6.4e-52 207.6 116 81.0
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.1e-51 206.8 137 72.3
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.1e-51 206.8 138 72.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.2e-51 205.3 141 68.1
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.2e-50 203.4 141 65.2
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.5e-50 201.8 138 68.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.0e-50 201.1 138 70.3
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 6.0e-50 201.1 138 65.2
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.0e-49 200.3 140 65.0
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.3e-49 199.9 202 53.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.7e-49 199.5 115 81.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.3e-49 199.1 141 68.1
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.3e-49 199.1 141 68.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.9e-49 198.4 141 65.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 5.0e-49 198.0 134 68.7
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 8.6e-49 197.2 115 80.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 8.6e-49 197.2 138 68.8
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.1e-48 196.8 116 79.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-48 196.8 141 66.0
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.9e-48 196.1 138 66.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 7.3e-48 194.1 141 65.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 9.5e-48 193.7 139 66.9
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-47 192.6 141 63.1
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.8e-46 189.5 139 64.0
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.8e-46 189.5 111 79.3
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.0e-46 188.3 138 65.2
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 6.8e-46 187.6 116 73.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.5e-45 186.4 139 64.7
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.0e-45 186.0 138 60.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 2.0e-45 186.0 119 72.3
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 5.8e-45 184.5 134 59.7
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.5e-45 184.1 138 61.6
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 9.8e-45 183.7 112 74.1
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 2.2e-44 182.6 140 56.4
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 8.3e-44 180.6 138 58.7
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 6.0e-42 174.5 112 69.6
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.6e-41 170.6 140 57.9
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.6e-40 167.9 99 77.8
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.6e-39 166.4 112 67.9
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.1e-38 163.7 141 56.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 9.2e-35 150.6 138 54.3
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-34 150.2 140 53.6
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.2e-34 150.2 140 53.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.3e-32 141.0 140 50.7
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-27 126.7 99 61.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-27 126.7 99 60.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.9e-27 126.3 79 74.7
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.4e-27 125.9 133 45.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.5e-26 122.1 133 46.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.1e-25 118.2 135 45.2
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.3e-24 115.5 83 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.4e-22 110.2 132 41.7
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 4.0e-22 108.6 140 42.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.0e-22 108.6 102 48.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.7e-20 103.2 128 42.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 4.9e-20 101.7 135 39.3
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.2e-19 99.0 138 37.7
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.3e-17 92.8 130 36.2
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.0e-17 92.4 54 75.9
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 7.3e-16 87.8 65 61.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 9.6e-16 87.4 59 66.1
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-15 86.7 112 43.8
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-15 86.3 50 80.0
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-15 86.3 50 80.0
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-15 86.3 50 80.0
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.8e-15 85.9 50 80.0
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.4e-14 83.6 99 43.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 5.3e-14 81.6 135 33.3
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.2e-11 72.4 84 40.5
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 4.6e-10 68.6 49 61.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.3e-09 66.2 116 37.1
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.6e-07 60.1 66 50.0
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 8.1e-07 57.8 36 72.2
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 2.4e-06 56.2 41 51.2


User provided reference genes

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