Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.7e-108 396.0 192 100.0
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 4.2e-91 338.2 192 85.4
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 3.5e-90 335.1 192 84.4
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.3e-89 333.2 192 83.3
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.7e-89 332.8 192 82.3
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 3.0e-89 332.0 192 82.3
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 5.1e-89 331.3 193 82.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 6.6e-89 330.9 192 82.3
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 8.7e-89 330.5 192 82.8
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 80.7
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 3.3e-88 328.6 192 80.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 3.3e-88 328.6 192 81.8
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 5.6e-88 327.8 192 82.3
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 9.6e-88 327.0 192 80.2
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 3.6e-87 325.1 192 81.8
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 3.6e-87 325.1 192 81.8
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 82.2
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 4.8e-87 324.7 192 81.8
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 6.2e-87 324.3 192 80.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 6.2e-87 324.3 192 81.8
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.1e-86 323.6 193 80.8
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.1e-86 323.6 192 80.2
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.1e-86 323.6 192 80.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.4e-86 323.2 192 81.2
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.8e-86 322.8 192 80.7
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.4e-86 322.4 192 79.2
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 80.7
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 80.7
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 80.2
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.1e-86 322.0 192 79.7
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 4.0e-86 321.6 193 78.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 4.0e-86 321.6 192 79.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 4.0e-86 321.6 193 80.3
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 5.3e-86 321.2 192 79.7
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.3e-86 321.2 192 79.7
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 6.9e-86 320.9 192 79.2
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 6.9e-86 320.9 194 80.4
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 6.9e-86 320.9 192 77.6
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 9.0e-86 320.5 189 81.0
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.2e-85 320.1 192 81.2
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.2e-85 320.1 193 79.8
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.5e-85 319.7 192 78.6
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.5e-85 319.7 192 79.7
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 1.5e-85 319.7 192 80.7
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 2.0e-85 319.3 189 79.9
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.6e-85 318.9 192 79.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.6e-85 318.9 192 80.2
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.4e-85 318.5 192 80.2
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.4e-85 318.5 192 80.2
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 78.5
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 3.4e-85 318.5 192 79.2
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.5e-85 318.2 192 79.7
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 4.5e-85 318.2 192 79.7
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 5.8e-85 317.8 192 80.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.8e-85 317.8 192 78.1
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 5.8e-85 317.8 192 79.2
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 7.6e-85 317.4 192 79.7
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 7.6e-85 317.4 192 77.6
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 7.6e-85 317.4 192 80.2
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 7.6e-85 317.4 189 79.9
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 7.6e-85 317.4 192 80.2
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 9.9e-85 317.0 192 79.2
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 9.9e-85 317.0 191 80.6
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.3e-84 316.6 192 79.7
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 1.3e-84 316.6 187 80.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.7e-84 316.2 192 77.1
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 1.7e-84 316.2 192 77.6
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.7e-84 316.2 192 77.6
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.7e-84 316.2 192 80.2
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.2e-84 315.8 192 78.6
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.2e-84 315.8 192 78.6
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 2.9e-84 315.5 192 79.7
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 2.9e-84 315.5 192 79.7
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 3.8e-84 315.1 192 77.1
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 4.9e-84 314.7 193 77.7
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 4.9e-84 314.7 189 78.3
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 6.4e-84 314.3 194 78.9
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 8.4e-84 313.9 193 78.8
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 8.4e-84 313.9 192 78.1
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 8.4e-84 313.9 192 80.2
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 1.1e-83 313.5 192 77.1
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.1e-83 313.5 192 76.0
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.1e-83 313.5 192 79.7
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.4e-83 313.2 192 79.2
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 2.4e-83 312.4 192 78.1
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 2.4e-83 312.4 192 77.6
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 2.4e-83 312.4 192 77.6
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 2.4e-83 312.4 192 76.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 3.2e-83 312.0 192 77.6
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 5.4e-83 311.2 194 78.4
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 1.2e-82 310.1 192 76.6
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.2e-82 310.1 192 76.6
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.2e-82 310.1 191 78.0
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.6e-82 309.7 192 76.6
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.1e-82 309.3 192 76.6
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 4.6e-82 308.1 192 75.5
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 7.9e-82 307.4 192 76.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-81 307.0 192 76.0
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.0e-81 307.0 192 75.5
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 2.3e-81 305.8 192 78.1
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.6e-80 300.4 191 75.9
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.6e-79 299.7 192 75.5
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.1e-79 299.3 193 75.1
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 6.2e-79 297.7 181 79.6
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.4e-78 296.6 193 74.6
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 2.4e-78 295.8 192 72.9
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.7e-68 263.1 192 64.6
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 8.4e-68 260.8 192 66.7
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.1e-67 257.7 192 65.6
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 6.0e-66 254.6 190 61.1
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 1.8e-65 253.1 159 76.1
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.3e-65 252.7 158 77.8
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.7e-65 250.8 192 63.5
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.1e-64 250.4 184 68.5
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.8e-62 243.0 149 81.2
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 6.1e-58 228.0 150 74.0
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.3e-55 218.0 186 54.8
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.2e-55 217.6 186 54.3
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 7.7e-53 211.1 150 68.0
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 8.5e-52 207.6 193 50.3
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.1e-51 207.2 187 55.6
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.3e-47 193.7 189 49.7
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.4e-46 189.5 185 51.9
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.2e-44 183.0 185 55.1
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 5.7e-40 168.3 190 48.9
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 9.7e-40 167.5 190 47.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 3.2e-35 152.5 94 78.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 2.8e-31 139.4 91 71.4
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 4.0e-25 119.0 191 36.6
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.2e-24 117.5 186 34.4
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 9.8e-24 114.4 79 67.1
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 2.7e-21 106.3 50 96.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.5e-11 73.2 165 30.9
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 3.1e-09 66.2 31 93.5
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 7.5e-08 61.6 28 92.9


User provided reference genes

Program Settings