Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.1e-204 716.5 359 100.0
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 4.1e-140 501.9 358 71.5
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.2e-127 458.4 372 64.0
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 5.7e-126 454.9 372 63.7
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.7e-125 452.2 368 63.3
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 5.3e-124 448.4 370 63.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.7e-122 443.4 365 62.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 3.8e-122 442.2 366 62.3
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.8e-122 442.2 365 62.2
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-122 441.4 365 62.2
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-122 441.4 365 62.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 8.5e-122 441.0 384 61.7
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.5e-122 441.0 365 61.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.1e-121 440.7 372 61.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.9e-121 439.9 369 62.1
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.2e-121 439.1 366 61.7
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.2e-121 439.1 365 61.9
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 4.2e-121 438.7 366 62.3
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 9.4e-121 437.6 381 60.4
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 9.4e-121 437.6 376 60.9
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.1e-120 436.4 370 61.9
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 2.7e-120 436.0 373 60.9
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 6.1e-120 434.9 366 61.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 5.2e-119 431.8 368 62.5
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 5.2e-119 431.8 373 60.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 6.7e-119 431.4 373 59.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 8.8e-119 431.0 370 61.1
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.5e-118 430.3 368 61.7
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.5e-118 430.3 374 61.5
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.0e-118 429.9 366 60.9
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.3e-118 429.1 376 60.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 4.4e-118 428.7 374 59.9
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 4.4e-118 428.7 377 60.2
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 7.5e-118 427.9 376 60.4
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 7.5e-118 427.9 372 60.8
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 9.7e-118 427.6 373 60.9
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 2.8e-117 426.0 372 59.1
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.7e-117 425.6 373 60.9
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 3.7e-117 425.6 377 59.9
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.8e-117 425.2 376 60.1
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 6.3e-117 424.9 375 59.7
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.4e-116 423.7 376 59.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.8e-116 423.3 379 59.4
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.8e-116 423.3 373 57.6
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.1e-116 422.5 369 60.2
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 4.1e-116 422.2 380 59.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 1.2e-115 420.6 374 59.1
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.2e-115 420.6 368 60.1
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.0e-115 419.9 372 59.4
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.0e-115 419.9 375 58.4
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.7e-115 419.5 368 59.8
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.5e-115 418.7 379 58.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 4.5e-115 418.7 376 59.3
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.9e-115 418.3 377 59.9
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 5.9e-115 418.3 376 58.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 7.7e-115 417.9 372 58.9
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.0e-114 417.5 369 60.4
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.2e-114 416.4 379 57.8
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.2e-114 416.4 385 57.7
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.9e-114 416.0 360 61.4
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 8.5e-114 414.5 372 59.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 8.5e-114 414.5 379 59.6
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.5e-113 411.8 380 57.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.1e-112 409.8 368 59.0
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.7e-112 409.5 376 57.4
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.8e-111 406.8 370 56.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.8e-111 406.8 368 58.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.8e-111 406.8 364 59.1
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 6.8e-111 404.8 367 61.0
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 8.8e-111 404.4 376 56.4
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.2e-110 404.1 363 57.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-110 403.3 380 55.5
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-110 402.9 380 55.5
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 3.4e-110 402.5 378 55.8
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 3.4e-110 402.5 376 56.6
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.4e-110 402.5 371 58.5
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.4e-110 402.1 380 55.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 5.7e-110 401.7 375 56.5
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 5.7e-110 401.7 365 59.2
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 7.5e-110 401.4 376 56.6
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.3e-109 400.6 367 58.9
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.2e-109 399.8 367 57.5
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.1e-108 397.5 375 55.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-108 397.5 375 55.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-108 397.1 375 55.7
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-108 397.1 368 59.0
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 9.1e-108 394.4 373 55.0
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.1e-108 394.4 375 54.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.2e-107 394.0 373 55.0
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.0e-107 393.3 372 57.0
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.7e-107 392.9 373 54.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 7.7e-107 391.3 374 54.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.3e-106 389.8 351 58.1
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.9e-105 386.7 377 53.8
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.5e-105 386.3 351 56.7
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 5.5e-105 385.2 383 54.8
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.8e-104 382.9 355 58.3
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.4e-103 380.6 373 54.2
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.8e-101 372.9 379 53.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-97 360.5 375 50.7
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-94 350.5 362 50.6
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.7e-93 347.1 338 55.6
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.7e-93 347.1 338 55.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.3e-93 344.7 360 51.7
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 9.5e-89 331.3 383 47.5
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.8e-87 327.0 365 49.3
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 8.3e-85 318.2 460 41.1
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.1e-84 317.8 290 57.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.4e-84 317.4 361 48.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 5.1e-82 308.9 295 54.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.5e-81 306.6 374 44.9
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.6e-80 302.8 372 46.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.0e-78 297.0 354 47.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.4e-71 274.2 362 43.4
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 2.0e-70 270.4 193 68.9
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 9.2e-68 261.5 337 44.5
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.5e-65 254.2 366 39.9
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.1e-64 250.4 343 42.9
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 4.9e-61 239.2 236 55.9
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 2.6e-54 216.9 197 52.3
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.9e-54 214.9 273 42.9
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.2e-53 213.8 184 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.3e-50 203.8 302 40.4
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.2e-45 187.2 179 59.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.1e-39 166.8 158 55.1
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 4.0e-39 166.4 290 33.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 8.4e-37 158.7 136 56.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 8.4e-37 158.7 175 49.1
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.1e-36 155.6 136 55.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-30 137.1 136 50.7
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 3.0e-26 123.6 108 63.9
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 9.7e-25 118.6 99 55.6
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.2e-24 117.5 109 54.1
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 3.7e-24 116.7 272 27.6
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.4e-23 114.8 95 54.7
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 5.3e-23 112.8 243 36.6
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-22 111.7 99 51.5
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.7e-21 107.8 99 49.5
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.5e-20 104.0 104 50.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 8.2e-16 89.0 91 58.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.0e-13 82.0 76 51.3
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.5e-13 79.3 100 45.0
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.5e-13 79.3 100 45.0
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.8e-10 71.2 58 56.9
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 8.8e-10 68.9 45 75.6
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 8.8e-10 68.9 93 43.0
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.8e-08 63.9 65 49.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.8e-08 63.2 65 49.2
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.4e-07 61.6 109 38.5
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.5e-06 56.6 59 45.8


User provided reference genes

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