Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 0.0e+00 1685.6 936 100.0
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 6.5e-81 306.6 920 33.5
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 2.2e-76 291.6 888 34.2
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 3.7e-76 290.8 835 32.9
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 2.8e-71 274.6 920 31.3
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 1.3e-68 265.8 861 33.7
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 1.6e-66 258.8 291 54.6
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 2.0e-66 258.5 305 51.8
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 8.0e-63 246.5 851 33.3
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 4.0e-62 244.2 908 31.9
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.7e-60 238.8 317 47.3
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 2.2e-60 238.4 324 47.5
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 6.4e-60 236.9 236 57.2
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 1.9e-59 235.3 329 45.0
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 2.4e-59 235.0 289 48.4
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 4.1e-59 234.2 231 55.8
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 5.4e-59 233.8 305 48.9
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 9.2e-59 233.0 214 57.0
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 3.5e-58 231.1 831 30.3
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 3.5e-58 231.1 245 55.5
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 4.6e-58 230.7 265 51.3
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 4.6e-58 230.7 277 48.4
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 7.8e-58 229.9 252 52.0
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 2.3e-57 228.4 244 54.5
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 5.0e-57 227.3 314 46.5
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 1.9e-56 225.3 226 52.2
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 3.3e-56 224.6 220 57.3
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 3.3e-56 224.6 222 56.3
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 9.5e-56 223.0 274 49.3
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.1e-55 221.9 226 56.6
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 2.8e-55 221.5 222 55.9
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 3.6e-55 221.1 263 48.7
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 4.7e-55 220.7 222 55.9
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 4.7e-55 220.7 220 54.5
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 1.8e-54 218.8 254 55.1
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 2.3e-54 218.4 281 48.0
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 8.9e-54 216.5 251 49.4
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 8.9e-54 216.5 285 46.0
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 8.9e-54 216.5 252 48.0
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.0e-53 215.3 854 28.6
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 7.5e-53 213.4 214 56.1
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.3e-52 212.6 242 50.8
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 2.2e-52 211.8 851 29.1
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 2.2e-52 211.8 313 42.2
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 2.9e-52 211.5 252 51.6
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 2.9e-52 211.5 216 53.2
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 5.4e-51 207.2 230 52.6
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 9.2e-51 206.5 283 45.6
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 9.2e-51 206.5 232 50.9
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 2.3e-49 201.8 259 47.5
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 6.6e-49 200.3 214 49.1
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 3.3e-48 198.0 212 52.8
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 8.1e-47 193.4 226 52.2
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 1.2e-45 189.5 196 52.0
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 1.4e-43 182.6 260 46.2
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 1.7e-33 149.1 217 41.0
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 3.0e-33 148.3 149 55.0
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 4.3e-32 144.4 174 47.7
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.2e-26 126.3 279 33.3
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.0e-25 123.2 242 35.5
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 1.3e-25 122.9 187 37.4
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.0e-25 121.7 218 39.0
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.0e-25 121.7 218 39.0
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.9e-24 119.0 142 44.4
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 8.1e-15 87.0 157 35.7
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 1.4e-11 76.3 134 32.8
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 4.2e-11 74.7 151 28.5
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.6e-10 72.8 58 60.3
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 3.5e-10 71.6 47 74.5
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 2.3e-09 68.9 319 26.6
HanXRQChr10g0307451 Helianthus annuus HOM05D008075 ORTHO05D010208 2.1e-07 62.4 48 66.7


User provided reference genes

Program Settings