Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 0.0e+00 1148.3 597 100.0
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-221 773.1 604 66.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.6e-221 771.5 605 65.1
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.5e-219 766.5 602 65.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-217 760.4 606 64.9
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.8e-216 754.6 643 62.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 9.6e-211 737.3 608 63.7
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.7e-189 666.0 633 55.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.5e-189 665.6 633 55.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.6e-189 665.2 621 58.5
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 3.9e-188 662.1 638 55.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.5e-187 659.4 639 55.1
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 7.4e-187 657.9 641 55.2
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 4.5e-184 648.7 630 57.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.5e-182 642.9 648 52.2
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 9.3e-182 641.0 629 53.7
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.0e-181 638.3 645 54.0
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.1e-180 635.2 659 53.1
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.7e-180 634.4 645 53.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.1e-179 634.0 646 52.3
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.3e-178 630.6 602 54.7
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 4.8e-178 628.6 623 57.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.4e-177 626.3 599 55.3
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.4e-176 622.5 638 52.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 7.6e-176 621.3 631 53.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.0e-175 620.9 643 51.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.0e-175 620.9 647 53.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.3e-175 620.5 618 53.1
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 3.8e-175 619.0 616 55.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 5.0e-175 618.6 617 53.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.1e-174 617.5 635 53.1
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.1e-174 617.5 654 52.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.9e-174 616.7 639 51.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.9e-174 616.7 643 52.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.5e-174 616.3 633 52.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.2e-174 615.9 610 53.8
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 4.2e-174 615.5 635 52.3
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 4.2e-174 615.5 644 51.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 9.3e-174 614.4 614 52.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.1e-173 613.2 640 52.0
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 3.6e-173 612.5 633 52.8
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 3.6e-173 612.5 615 53.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.6e-173 612.5 637 52.0
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 4.6e-173 612.1 607 53.7
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 4.6e-173 612.1 621 52.8
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.6e-173 612.1 616 53.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.9e-173 611.3 625 53.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.0e-172 610.9 639 52.0
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-172 609.8 618 52.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.0e-172 609.4 638 51.9
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 8.7e-172 607.8 634 52.5
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.3e-171 605.5 636 51.4
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.7e-171 605.1 621 53.0
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 7.4e-171 604.7 630 52.1
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.8e-170 602.8 640 53.3
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.8e-170 602.8 634 53.8
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.7e-170 602.4 643 53.3
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 8.2e-170 601.3 632 51.9
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.4e-169 600.5 635 49.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.5e-168 597.0 639 51.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.0e-168 596.7 635 49.6
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 4.5e-168 595.5 628 52.4
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.7e-167 593.6 564 56.2
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.2e-166 589.3 644 50.5
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 4.2e-166 589.0 624 52.6
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.9e-164 582.4 612 51.8
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 3.9e-164 582.4 632 50.5
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 5.1e-164 582.0 639 50.1
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 5.7e-163 578.6 644 49.7
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.1e-161 572.4 617 50.1
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 9.1e-161 571.2 647 49.9
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.3e-159 567.4 641 49.6
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.7e-159 567.0 656 50.0
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.8e-159 565.8 612 52.1
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.5e-159 564.7 621 49.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.1e-158 564.3 604 50.7
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.5e-158 563.1 668 47.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.5e-158 563.1 641 48.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.7e-157 559.7 644 49.5
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 4.7e-157 558.9 601 52.1
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.8e-156 557.0 655 49.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.3e-156 556.6 656 49.7
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 7.4e-155 551.6 656 50.5
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.7e-154 550.4 647 48.4
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.1e-153 547.7 648 48.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 4.1e-153 545.8 643 48.4
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.6e-152 543.9 654 46.0
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.6e-152 543.1 637 47.4
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.7e-151 540.4 628 48.7
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.2e-151 540.0 642 47.8
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 8.5e-151 538.1 651 46.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 2.5e-150 536.6 649 47.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 4.2e-150 535.8 653 45.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.2e-150 535.8 613 49.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.7e-149 533.1 687 46.3
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.3e-148 530.0 634 49.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 3.0e-148 529.6 663 45.7
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.8e-146 523.1 641 45.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.4e-145 520.8 627 45.1
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.4e-145 520.0 641 45.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.1e-145 519.6 641 45.6
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-144 515.4 641 45.6
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.9e-143 513.1 681 43.3
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.2e-141 507.7 599 49.1
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-141 507.3 591 47.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.3e-140 503.4 564 49.8
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 6.8e-140 501.9 518 53.7
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 7.5e-139 498.4 591 46.9
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 3.1e-137 493.0 555 51.2
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.8e-135 486.1 537 49.0
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.0e-135 485.7 504 52.6
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.9e-127 459.9 694 41.4
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 8.9e-124 448.4 551 47.0
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-123 448.0 588 45.4
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 3.0e-111 406.8 737 37.0
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.6e-107 393.7 426 51.6
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.4e-107 393.3 681 40.4
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-106 391.3 678 38.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 7.3e-102 375.6 648 38.3
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.8e-96 355.5 602 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.1e-94 351.7 479 42.4
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-94 350.5 524 42.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-90 338.2 746 35.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.0e-76 290.0 503 38.2
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.0e-55 220.7 603 29.2
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.4e-51 207.2 225 48.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.6e-46 191.0 347 35.2
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 9.1e-44 182.6 221 47.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 6.7e-39 166.4 277 36.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.7e-37 160.6 210 44.3
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 5.5e-33 146.7 98 72.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.5e-33 146.7 95 71.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 9.4e-33 146.0 95 70.5
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 8.0e-24 116.3 119 49.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 5.2e-15 87.0 245 32.7
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 2.6e-14 84.7 73 50.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.8e-13 81.3 82 54.9
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.3e-13 79.7 56 58.9
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.6e-11 75.5 48 64.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.3e-10 72.4 51 60.8
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 8.6e-10 69.7 178 31.5
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 2.1e-08 65.1 180 29.4
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 8.0e-08 63.2 175 30.9
CDE06G0794 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 1.8e-07 62.0 276 28.6
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 1.8e-07 62.0 193 28.5
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 1.2e-06 59.3 168 31.0
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 2.0e-06 58.5 215 29.3
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.4e-06 57.8 49 57.1
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 4.4e-06 57.4 187 25.7
QL01p014004 Quercus lobata HOM05D001312 ORTHO05D001832 5.8e-06 57.0 164 29.9
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 7.5e-06 56.6 191 29.8
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 9.8e-06 56.2 165 26.7


User provided reference genes

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