Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.8e-89 334.3 168 100.0
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.9e-46 191.4 172 55.2
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.7e-42 178.3 169 53.8
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 3.8e-39 167.2 169 50.3
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 6.5e-39 166.4 170 50.0
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.1e-38 165.6 173 49.7
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.5e-38 165.2 171 48.5
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.5e-38 164.5 172 48.8
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.2e-38 163.7 172 48.8
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.2e-38 163.7 172 48.8
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.2e-37 162.2 172 48.3
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.2e-37 162.2 172 48.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 2.3e-36 157.9 168 49.4
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.0e-35 154.8 167 50.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.5e-35 152.9 176 46.6
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.7e-34 151.8 168 47.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.7e-34 150.6 157 47.8
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.1e-33 149.1 171 43.9
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.4e-33 147.9 177 46.3
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 2.4e-33 147.9 170 45.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 7.0e-33 146.4 167 46.7
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.0e-31 142.5 183 45.4
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.3e-31 142.1 167 45.5
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.7e-31 141.7 110 60.0
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.3e-31 141.4 166 46.4
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 2.3e-31 141.4 167 46.1
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 2.9e-31 141.0 168 46.4
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 5.0e-31 140.2 169 42.6
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 8.6e-31 139.4 98 62.2
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.1e-30 139.0 161 44.7
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.8e-29 134.4 109 57.8
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 2.8e-29 134.4 125 54.4
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 3.6e-29 134.0 173 40.5
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 4.7e-29 133.7 180 41.7
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 8.0e-29 132.9 168 46.4
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 8.0e-29 132.9 178 44.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.8e-28 131.7 162 45.7
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.0e-28 131.0 170 45.3
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 5.2e-28 130.2 141 47.5
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.9e-28 129.4 169 44.4
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 5.7e-27 126.7 172 41.3
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 9.8e-27 125.9 136 50.7
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 9.8e-27 125.9 176 38.6
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 9.8e-27 125.9 168 40.5
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.3e-26 125.6 104 57.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 3.7e-26 124.0 105 55.2
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 4.9e-26 123.6 134 50.0
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.9e-26 123.6 96 57.3
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 6.4e-26 123.2 169 40.8
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.8e-25 121.7 136 48.5
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 4.1e-25 120.6 120 47.5
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 7.0e-25 119.8 168 38.1
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 9.2e-25 119.4 168 37.5
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 9.2e-25 119.4 168 37.5
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 2.7e-24 117.9 168 38.1
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 5.9e-24 116.7 215 34.9
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.5e-22 112.1 176 38.1
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.5e-22 112.1 178 38.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.9e-22 111.7 169 40.2
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 3.3e-22 110.9 176 37.5
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.3e-22 110.5 175 36.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.3e-22 110.5 175 36.0
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 7.3e-22 109.8 171 37.4
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.8e-21 107.8 105 45.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 6.2e-21 106.7 76 63.2
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 6.8e-20 103.2 98 53.1
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 8.9e-20 102.8 173 37.0
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.5e-19 102.1 76 57.9
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 5.8e-19 100.1 167 37.1
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 7.5e-19 99.8 169 39.1
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.2e-18 98.2 166 39.8
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.9e-18 97.8 166 36.7
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 3.7e-18 97.4 113 44.2
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 4.9e-18 97.1 151 41.1
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.9e-17 95.1 173 35.8
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.2e-17 94.4 177 36.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.2e-17 94.4 107 43.9
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.3e-15 89.0 168 33.9
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 6.6e-15 86.7 70 57.1
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.1e-14 85.9 184 29.3
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.5e-14 85.5 97 46.4
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 7.3e-14 83.2 128 39.1
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.8e-13 81.3 69 52.2
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 1.5e-11 75.5 108 33.3
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 1.5e-11 75.5 174 32.8
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 4.4e-11 73.9 215 27.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 7.5e-11 73.2 184 28.3
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 7.5e-11 73.2 186 26.9
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 7.5e-11 73.2 113 32.7
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 2.9e-10 71.2 43 69.8
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.9e-10 70.5 190 26.3
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 4.9e-10 70.5 43 67.4
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 8.3e-10 69.7 47 70.2
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 8.3e-10 69.7 50 66.0
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.9e-09 68.6 43 67.4
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 9.2e-09 66.2 44 59.1
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.0e-07 62.8 91 36.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.0e-07 62.8 91 36.3
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 1.3e-07 62.4 69 47.8
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.7e-07 62.0 110 32.7
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 4.3e-06 57.4 99 32.3
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 7.3e-06 56.6 165 24.8


User provided reference genes

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