Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 6.1e-225 783.9 411 100.0
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 4.3e-146 521.9 410 71.2
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.0e-142 508.4 415 68.9
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 3.6e-140 502.3 415 68.7
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.5e-135 486.9 439 64.7
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.0e-135 486.5 411 62.8
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 6.5e-134 481.5 348 73.9
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 4.2e-133 478.8 411 62.3
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.6e-132 476.9 413 64.4
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.7e-132 476.1 411 62.5
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 2.7e-132 476.1 423 63.1
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 5.2e-131 471.9 413 63.7
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 2.6e-130 469.5 361 71.2
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 3.3e-130 469.2 421 62.7
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 5.7e-130 468.4 417 62.1
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 7.4e-130 468.0 411 64.0
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.7e-129 466.8 414 63.5
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 2.8e-129 466.1 421 63.9
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 1.1e-128 464.2 422 62.6
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 4.1e-128 462.2 355 69.6
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 5.3e-128 461.8 360 68.9
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 1.2e-127 460.7 420 63.6
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 1.6e-127 460.3 358 69.8
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 2.0e-127 459.9 414 61.6
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 2.0e-127 459.9 415 63.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 4.5e-127 458.8 413 63.2
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 7.7e-127 458.0 411 63.3
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 1.0e-126 457.6 365 66.8
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.3e-126 457.2 414 64.5
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.5e-125 453.8 411 62.0
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.9e-125 453.4 424 64.2
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.9e-125 453.4 418 62.0
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 1.9e-125 453.4 395 64.6
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 4.2e-125 452.2 369 66.9
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 4.2e-125 452.2 397 63.7
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 7.2e-125 451.4 353 69.1
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 9.4e-125 451.1 417 62.1
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 1.2e-124 450.7 415 61.0
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 3.6e-124 449.1 417 61.2
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 6.1e-124 448.4 423 60.0
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 8.0e-124 448.0 413 63.2
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.0e-123 447.6 415 60.5
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.4e-123 447.2 377 64.7
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 5.2e-123 445.3 417 61.6
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 5.2e-123 445.3 412 61.2
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 8.8e-123 444.5 429 59.4
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.5e-122 443.7 413 61.5
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 2.4e-120 436.4 362 65.5
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 3.1e-120 436.0 412 59.2
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 7.0e-120 434.9 362 65.7
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 1.2e-119 434.1 414 61.6
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.6e-119 433.7 415 61.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 2.0e-119 433.3 433 58.9
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 3.5e-119 432.6 432 58.1
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 1.7e-118 430.3 360 65.8
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 2.9e-118 429.5 376 62.8
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 5.0e-118 428.7 414 58.7
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 1.5e-117 427.2 411 59.1
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.5e-117 425.2 430 57.4
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.2e-117 424.9 430 57.7
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 9.4e-117 424.5 419 58.7
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 2.7e-116 422.9 430 58.1
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.7e-116 422.2 430 57.4
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.7e-116 422.2 430 57.4
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.4e-115 420.6 444 55.2
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 1.4e-115 420.6 411 58.9
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.8e-115 420.2 411 59.6
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.8e-115 420.2 438 54.3
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 3.0e-115 419.5 336 66.1
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 4.0e-115 419.1 433 55.4
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 4.0e-115 419.1 335 67.2
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 8.8e-115 417.9 411 58.4
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 2.6e-114 416.4 417 58.3
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 3.4e-114 416.0 413 57.1
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 4.4e-114 415.6 438 55.5
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 5.7e-114 415.2 446 56.1
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 7.5e-114 414.8 411 57.9
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 1.1e-112 411.0 417 57.1
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.4e-112 410.6 440 54.1
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 3.1e-112 409.5 412 56.6
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 2.7e-111 406.4 524 49.6
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 3.5e-111 406.0 425 57.2
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 5.0e-110 402.1 418 56.7
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 5.0e-110 402.1 420 58.3
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 4.2e-109 399.1 418 55.7
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 2.1e-108 396.7 437 54.0
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 8.0e-108 394.8 430 55.3
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.3e-107 393.3 430 55.1
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 3.0e-107 392.9 444 52.0
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 8.9e-107 391.3 320 64.1
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.7e-106 388.7 430 54.7
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 9.8e-106 387.9 438 52.3
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 1.3e-105 387.5 438 52.3
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 7.0e-104 381.7 423 52.7
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 7.0e-104 381.7 413 55.7
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 9.2e-104 381.3 378 57.1
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 4.6e-103 379.0 416 56.2
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 6.4e-97 358.6 330 62.4
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 5.4e-96 355.5 353 58.1
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.4e-91 340.9 340 56.2
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 2.9e-89 333.2 330 60.0
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 4.1e-88 329.3 315 59.4
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 5.4e-80 302.4 410 46.6
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.3e-78 297.7 272 59.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.6e-76 289.7 270 57.8
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 3.1e-75 286.6 335 51.3
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 4.9e-73 279.3 326 54.9
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 1.3e-68 264.6 390 43.6
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.2e-68 262.3 305 53.4
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 1.3e-65 254.6 215 63.7
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 2.1e-55 220.7 397 39.8
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.6e-44 184.5 123 78.0
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.2e-42 178.3 135 69.6
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 2.5e-40 170.6 210 51.9
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 4.2e-32 143.3 88 73.9
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.7e-25 121.3 314 30.3
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 9.4e-16 89.0 76 59.2
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 3.6e-15 87.0 141 46.8
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.2e-12 77.8 66 59.1
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 2.8e-12 77.4 246 31.3
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 4.5e-10 70.1 324 24.7
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-09 68.9 103 40.8
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-09 68.9 111 38.7
CDE06G2524 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 4.0e-06 57.0 85 44.7
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 5.2e-06 56.6 124 36.3
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 6.8e-06 56.2 179 30.2


User provided reference genes

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