Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.2e-76 288.9 148 100.0
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 7.0e-62 240.7 148 85.1
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-60 236.5 148 83.8
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-60 236.5 148 83.8
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.3e-60 236.5 148 83.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 6.5e-60 234.2 148 83.8
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 4.2e-59 231.5 148 83.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 7.2e-59 230.7 148 81.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 1.2e-58 229.9 148 81.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.2e-58 229.9 148 83.1
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 2.7e-58 228.8 148 81.8
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.0e-57 226.9 148 80.4
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.8e-57 226.1 148 79.7
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 2.0e-56 222.6 148 79.1
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 2.0e-56 222.6 148 80.4
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 2.0e-56 222.6 148 80.4
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 2.6e-56 222.2 148 77.7
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 2.6e-56 222.2 149 80.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 3.3e-56 221.9 148 79.1
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 4.4e-56 221.5 149 79.2
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 4.4e-56 221.5 148 79.1
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 7.5e-56 220.7 148 79.1
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.5e-56 220.7 148 79.1
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.3e-55 219.9 148 78.4
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.3e-55 219.9 148 78.4
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.7e-55 219.5 148 79.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-55 219.2 148 81.8
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.8e-55 218.8 148 81.8
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.8e-55 218.8 148 79.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.8e-55 218.8 148 79.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.7e-55 218.4 149 79.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.7e-55 218.4 149 79.9
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 6.3e-55 217.6 148 77.0
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.1e-54 216.9 148 78.4
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.1e-54 216.9 148 76.4
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.1e-54 216.9 148 77.0
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.4e-54 216.5 139 82.0
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.4e-54 216.5 147 78.2
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.4e-54 216.5 146 80.1
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.8e-54 216.1 148 79.7
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.8e-54 216.1 148 77.0
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.1e-54 215.3 148 77.7
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.1e-54 215.3 148 79.7
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 3.1e-54 215.3 148 76.4
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 4.1e-54 214.9 148 77.7
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 4.1e-54 214.9 148 76.4
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.3e-54 214.5 149 77.2
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.3e-54 214.5 149 77.2
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 5.3e-54 214.5 149 77.2
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 5.3e-54 214.5 148 77.7
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 7.0e-54 214.2 149 77.9
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 2.0e-53 212.6 149 78.5
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 2.7e-53 212.2 149 77.2
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 3.5e-53 211.8 146 76.0
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.5e-53 211.8 146 76.0
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 3.5e-53 211.8 146 76.0
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 4.5e-53 211.5 149 76.5
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 5.9e-53 211.1 148 77.7
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.9e-53 211.1 146 76.0
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 5.9e-53 211.1 149 77.2
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 7.7e-53 210.7 146 75.3
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.0e-52 210.3 148 75.7
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.0e-52 210.3 149 76.5
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.3e-52 209.9 149 76.5
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.3e-52 209.9 146 75.3
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 2.2e-52 209.1 149 76.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.2e-52 209.1 149 77.2
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.2e-52 209.1 148 76.4
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.8e-52 208.4 149 76.5
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 8.5e-52 207.2 148 75.7
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 8.5e-52 207.2 150 75.3
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.1e-51 206.8 148 75.0
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.5e-51 206.5 149 76.5
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.5e-51 206.5 149 75.8
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.5e-51 205.7 151 74.2
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 2.5e-51 205.7 149 75.8
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 9.4e-51 203.8 155 73.5
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.6e-50 201.8 149 74.5
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 3.6e-50 201.8 152 74.3
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.4e-49 199.9 147 73.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 3.0e-49 198.7 151 71.5
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 6.8e-49 197.6 149 69.8
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.2e-48 196.8 148 74.3
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.0e-48 196.1 152 70.4
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 2.0e-48 196.1 152 70.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 2.6e-48 195.7 148 73.6
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 4.4e-48 194.9 154 70.1
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 7.5e-48 194.1 153 69.9
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.3e-47 193.4 154 70.1
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.3e-47 193.4 149 70.5
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 6.3e-47 191.0 157 68.8
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.1e-46 190.3 141 73.8
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.4e-46 189.9 151 68.9
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 5.4e-46 188.0 152 69.1
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 5.4e-46 188.0 152 69.7
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 9.1e-46 187.2 153 68.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 9.1e-46 187.2 150 68.0
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-45 186.8 148 68.9
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.0e-45 186.0 148 68.9
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.3e-44 183.3 148 68.2
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.9e-44 182.2 117 81.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.8e-44 181.8 147 68.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-43 180.3 147 67.3
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 2.8e-42 175.6 141 70.2
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.7e-42 174.9 140 67.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 4.7e-42 174.9 140 67.9
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.8e-41 172.9 154 64.9
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.2e-41 171.4 110 81.8
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 6.3e-39 164.5 163 59.5
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 9.2e-38 160.6 151 62.9
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 1.2e-37 160.2 154 63.0
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.6e-37 159.8 113 76.1
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.7e-37 159.1 107 78.5
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 7.8e-37 157.5 147 61.9
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 9.5e-35 150.6 148 59.5
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.0e-33 147.1 151 55.6
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 2.3e-33 146.0 102 74.5
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.2e-32 143.7 149 59.1
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 3.2e-30 135.6 134 53.7
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 4.1e-30 135.2 148 56.1
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 6.0e-29 131.3 105 67.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 7.8e-29 131.0 134 57.5
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 1.7e-28 129.8 89 78.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 1.7e-28 129.8 105 66.7
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.7e-28 129.8 152 52.6
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 3.3e-27 125.6 85 74.1
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 7.3e-27 124.4 151 48.3
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 5.2e-25 118.2 168 47.0
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 5.6e-19 98.2 78 64.1
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.6e-18 96.7 79 60.8
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 2.1e-18 96.3 79 55.7
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.7e-18 95.1 71 66.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.7e-18 95.1 71 66.2
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 6.2e-18 94.7 134 42.5
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 6.2e-18 94.7 95 54.7
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 2.0e-16 89.7 71 62.0
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.8e-16 88.2 69 58.0
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.8e-16 88.2 69 62.3
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 7.5e-16 87.8 69 62.3
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.9e-16 87.4 69 60.9
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.2e-13 80.5 146 40.4
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.1e-12 75.1 72 51.4
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 8.6e-12 74.3 72 51.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 2.8e-10 69.3 70 48.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 6.8e-09 64.7 72 47.2
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 8.9e-09 64.3 127 40.9
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 9.9e-08 60.8 72 43.1
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.9e-07 58.5 72 44.4
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 8.4e-07 57.8 51 60.8
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 9.2e-06 54.3 72 41.7


User provided reference genes

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