Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 6.2e-193 677.2 315 100.0
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 3.2e-125 452.2 335 64.5
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.1e-124 449.5 328 65.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 3.7e-121 438.7 329 64.1
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 8.3e-121 437.6 343 62.7
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 1.4e-120 436.8 321 65.4
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.8e-120 436.4 335 65.4
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.2e-119 433.7 330 63.6
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 1.6e-119 433.3 320 63.8
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 4.5e-119 431.8 327 64.8
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 5.9e-119 431.4 325 64.3
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 7.7e-119 431.0 338 62.1
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 2.3e-118 429.5 331 64.0
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 2.3e-118 429.5 334 63.2
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 3.8e-118 428.7 342 61.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.5e-117 426.8 335 62.7
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.5e-117 426.8 331 63.1
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.9e-117 426.4 339 61.1
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 4.2e-117 425.2 325 64.0
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 5.5e-117 424.9 336 63.1
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 7.2e-117 424.5 334 62.0
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 7.2e-117 424.5 332 64.2
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 9.5e-117 424.1 342 62.0
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 9.5e-117 424.1 333 64.3
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.2e-116 423.7 331 62.8
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 2.1e-116 422.9 340 61.2
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 2.8e-116 422.5 331 63.1
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.7e-116 421.8 331 62.8
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 6.1e-116 421.4 328 62.5
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.8e-115 419.9 326 62.6
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 1.8e-115 419.9 331 61.6
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 2.3e-115 419.5 334 62.9
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 5.2e-115 418.3 331 62.8
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 8.8e-115 417.5 320 62.5
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.5e-114 416.8 331 62.5
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 7.5e-114 414.5 329 61.4
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.3e-113 413.7 337 62.9
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.2e-113 412.9 346 59.8
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 2.2e-113 412.9 332 62.3
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.8e-113 412.5 337 60.8
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 6.3e-113 411.4 331 60.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 1.1e-112 410.6 337 59.9
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.1e-112 410.6 331 60.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 4.1e-112 408.7 347 58.5
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 5.4e-112 408.3 330 61.2
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 5.4e-112 408.3 342 59.1
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 7.0e-112 407.9 361 59.0
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 7.0e-112 407.9 328 61.6
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 9.2e-112 407.5 309 64.4
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.2e-111 407.1 337 57.9
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 1.6e-111 406.8 328 59.5
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 2.7e-111 406.0 325 61.8
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 2.7e-111 406.0 360 58.6
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 3.5e-111 405.6 327 62.1
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 2.9e-110 402.5 334 59.3
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.8e-110 402.1 309 63.1
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 3.8e-110 402.1 328 59.5
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 3.8e-110 402.1 331 58.9
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 6.6e-110 401.4 328 60.7
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.9e-109 399.8 325 62.5
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.2e-108 397.1 335 58.5
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 2.1e-108 396.4 333 58.9
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 2.8e-108 396.0 328 59.8
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 3.6e-108 395.6 340 58.2
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 1.8e-107 393.3 334 58.1
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 8.9e-107 391.0 342 57.6
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 8.9e-107 391.0 312 60.6
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 2.6e-106 389.4 341 57.2
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 2.6e-106 389.4 332 58.1
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.6e-106 389.4 333 58.0
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 7.5e-106 387.9 332 56.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-105 387.1 311 60.8
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 2.2e-105 386.3 312 60.6
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.2e-103 380.6 327 57.5
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.7e-102 376.7 344 56.1
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 2.3e-102 376.3 335 57.0
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 8.6e-102 374.4 314 57.3
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 7.3e-101 371.3 367 53.4
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.1e-99 367.5 319 59.2
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.4e-99 367.1 315 59.0
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 6.8e-99 364.8 319 58.6
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.6e-98 362.8 322 55.9
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 7.5e-98 361.3 338 55.3
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 6.4e-97 358.2 310 58.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.1e-96 357.5 340 55.3
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.6e-95 353.6 388 49.0
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 4.6e-95 352.1 324 55.9
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 1.3e-94 350.5 425 45.2
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.3e-94 350.5 293 60.8
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 6.6e-94 348.2 325 53.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 7.3e-93 344.7 404 47.3
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 6.2e-92 341.7 396 48.0
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 4.0e-91 339.0 404 46.5
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 9.9e-90 334.3 413 45.5
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 2.2e-89 333.2 281 58.7
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 2.2e-89 333.2 319 53.3
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 6.4e-89 331.6 273 59.7
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 9.2e-88 327.8 323 50.8
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.2e-87 327.4 257 63.0
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 4.6e-87 325.5 322 51.9
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 3.9e-86 322.4 316 52.2
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 5.2e-83 312.0 292 53.4
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.7e-81 307.0 326 50.6
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 2.2e-81 306.6 309 50.5
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 7.1e-80 301.6 317 49.5
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 7.1e-80 301.6 317 49.5
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 2.7e-79 299.7 250 59.6
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.7e-79 299.7 321 50.2
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.1e-75 287.7 305 49.2
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.4e-74 282.3 365 40.8
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 1.1e-72 277.7 357 45.1
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 4.2e-72 275.8 330 46.4
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 6.6e-70 268.5 251 54.6
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 7.3e-69 265.0 422 37.2
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 2.1e-68 263.5 397 39.8
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 4.8e-68 262.3 170 71.8
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 4.8e-68 262.3 317 43.5
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 6.2e-68 261.9 310 44.2
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 8.1e-68 261.5 313 44.7
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 5.3e-67 258.8 319 42.9
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 5.8e-66 255.4 487 34.3
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 7.9e-63 245.0 419 35.3
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 9.6e-61 238.0 324 39.8
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.6e-58 229.9 320 42.2
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.6e-58 229.9 312 39.7
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 5.8e-58 228.8 320 41.6
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 5.3e-51 205.7 215 53.0
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.4e-48 197.6 413 32.4
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 2.3e-46 190.3 207 51.2
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.6e-42 176.8 202 45.5
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 6.3e-36 155.6 98 70.4
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.8e-30 137.5 132 51.5
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 4.4e-21 106.3 243 30.9
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.1e-19 101.7 167 37.1
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 2.9e-17 93.6 118 41.5
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.5e-08 63.9 56 57.1
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 4.2e-08 63.2 319 25.1
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 5.5e-08 62.8 314 24.2
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 7.2e-08 62.4 91 40.7
Solyc02g088590.4 Solanum lycopersicum HOM05D002394 ORTHO05D002508 1.6e-07 61.2 319 24.8
Sopen02g033320 Solanum pennellii HOM05D002394 ORTHO05D002508 1.6e-07 61.2 319 24.8
Glyma.19G027700 Glycine max HOM05D002394 ORTHO05D002508 3.6e-07 60.1 317 25.2
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 3.6e-07 60.1 315 22.9
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 24.3
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 24.3
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 24.3
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 24.3
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 4.7e-07 59.7 313 24.3
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 4.7e-07 59.7 316 23.1
Manes.01G098800 Manihot esculenta HOM05D002394 ORTHO05D002508 4.7e-07 59.7 322 24.5
QL02p039501 Quercus lobata HOM05D002394 ORTHO05D002508 6.1e-07 59.3 319 23.8
Glyma.13G058800 Glycine max HOM05D002394 ORTHO05D002508 8.0e-07 58.9 317 26.2
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 1.0e-06 58.5 313 23.3
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 1.0e-06 58.5 313 23.3
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 1.0e-06 58.5 317 23.7
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 1.8e-06 57.8 319 23.8
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.8e-06 57.8 316 22.8
PSO017G0834 Papaver somniferum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 314 24.5
PSO478G3218 Papaver somniferum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 314 24.5
Thecc.04G091100 Theobroma cacao HOM05D002394 ORTHO05D002508 1.8e-06 57.8 319 23.2
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 2.3e-06 57.4 317 23.0
Duzib264G0540 Durio zibethinus HOM05D002394 ORTHO05D002508 2.3e-06 57.4 319 23.8
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 2.3e-06 57.4 313 23.0
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 2.3e-06 57.4 313 23.3
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 3.0e-06 57.0 121 30.6
Migut.K01292 Erythranthe guttata HOM05D002394 ORTHO05D002508 4.0e-06 56.6 320 23.1
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 5.2e-06 56.2 313 22.7
RcHm_v2.0_Chr2g0166511 Rosa chinensis HOM05D002394 ORTHO05D002508 5.2e-06 56.2 319 25.1
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 6.8e-06 55.8 313 23.3
Lj2g0005081 Lotus japonicus HOM05D002394 ORTHO05D002508 6.8e-06 55.8 84 38.1
COL.COLO4_21379 Corchorus olitorius HOM05D002394 ORTHO05D002508 8.8e-06 55.5 319 23.8
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 8.8e-06 55.5 317 23.0
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 8.8e-06 55.5 320 23.1


User provided reference genes

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