Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.2e-62 243.0 127 100.0
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 87.4
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 86.6
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 6.0e-54 214.2 127 85.8
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 86.6
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 2.3e-53 212.2 124 86.3
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.8
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.8
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.5e-52 209.5 128 86.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 3.3e-52 208.4 128 85.9
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 5.6e-52 207.6 128 86.7
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 85.0
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 85.0
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 7.3e-52 207.2 128 85.2
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 84.3
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 83.5
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 84.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.1e-51 205.7 122 87.7
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 128 84.4
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.8e-51 205.3 127 81.9
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 82.7
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 83.5
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 82.7
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 83.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 81.9
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 82.7
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 6.2e-51 204.1 125 84.0
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 6.2e-51 204.1 127 83.5
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 82.7
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.4e-50 203.0 127 81.9
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.8e-50 202.6 124 83.9
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.8e-50 202.6 122 85.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 1.8e-50 202.6 126 82.5
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 81.1
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.1
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.9
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.9
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 5.2e-50 201.1 127 81.1
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.1
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.1
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 79.5
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 80.6
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 80.3
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 123 82.9
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 129 80.6
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.2e-49 199.9 127 80.3
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-49 199.9 126 81.0
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 80.3
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 79.5
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 82.2
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 2.0e-49 199.1 127 79.5
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 2.0e-49 199.1 127 78.7
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 79.5
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 3.4e-49 198.4 125 81.6
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 4.4e-49 198.0 129 78.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 4.4e-49 198.0 127 79.5
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-48 196.4 127 79.5
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 79.5
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.9e-48 195.3 127 78.0
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.1e-47 193.4 129 78.3
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.1e-47 193.4 129 77.5
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.9e-47 192.6 129 79.1
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 3.2e-47 191.8 126 77.8
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 7.1e-47 190.7 126 75.4
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 9.3e-47 190.3 126 78.6
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.2e-46 189.9 127 77.2
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.6e-46 189.5 126 77.0
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.6e-46 189.5 124 78.2
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.1e-46 189.1 128 77.3
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 2.1e-46 189.1 129 77.5
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 2.1e-46 189.1 126 76.2
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 2.1e-46 189.1 127 77.2
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.7e-46 188.7 127 74.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.7e-46 188.7 129 76.0
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 3.5e-46 188.3 128 75.8
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 6.0e-46 187.6 131 73.3
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 6.0e-46 187.6 131 73.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 6.0e-46 187.6 127 74.8
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 7.8e-46 187.2 125 74.4
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 7.8e-46 187.2 126 76.2
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 7.8e-46 187.2 126 75.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 7.8e-46 187.2 127 74.8
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 1.0e-45 186.8 123 79.7
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.3e-45 186.4 123 74.8
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 1.7e-45 186.0 128 74.2
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.7e-45 186.0 123 74.8
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 2.3e-45 185.7 125 75.2
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 3.0e-45 185.3 126 73.0
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 3.0e-45 185.3 124 75.8
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 8.7e-45 183.7 129 73.6
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.5e-44 183.0 129 71.3
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 3.3e-44 181.8 128 72.7
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 7.3e-44 180.6 118 75.4
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.3e-43 179.9 118 75.4
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.6e-43 179.5 118 74.6
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 2.8e-43 178.7 128 71.9
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 6.2e-43 177.6 127 72.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 5.3e-42 174.5 127 70.9
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 6.9e-42 174.1 127 70.9
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 6.9e-42 174.1 129 72.1
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 3.4e-41 171.8 148 62.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.8e-41 171.0 127 72.4
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 7.6e-41 170.6 129 71.3
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 7.6e-41 170.6 129 71.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.8e-40 168.3 127 70.9
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 3.2e-39 165.2 127 69.3
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.2e-38 163.3 127 69.3
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 67.7
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 6.7e-37 157.5 127 66.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 7.4e-36 154.1 127 64.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.1e-35 152.5 154 57.8
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 6.9e-34 147.5 127 60.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 3.8e-32 141.7 127 58.3
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.2e-31 138.3 127 57.5
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.2e-30 136.7 88 80.7
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 2.3e-29 132.5 90 73.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 8.7e-29 130.6 133 54.9
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.3e-27 126.7 87 77.0
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.6e-27 126.3 87 74.7
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.5e-25 119.8 87 69.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 2.7e-22 109.0 121 46.3
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.5e-17 93.2 121 43.8
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.9e-16 89.0 121 43.8
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 3.8e-16 88.6 61 73.8
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 2.2e-11 72.8 54 70.4
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 8.2e-11 70.9 40 80.0
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 5.3e-10 68.2 55 63.6
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-09 66.6 50 70.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 7.2e-07 57.8 31 80.6
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.6e-06 56.6 39 66.7


User provided reference genes

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