Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 2.3e-70 268.9 145 100.0
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 8.1e-31 137.5 143 60.8
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 6.4e-28 127.9 105 66.7
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.1e-27 127.1 145 57.2
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.1e-27 127.1 148 59.5
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 1.4e-27 126.7 143 57.3
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.9e-27 126.3 145 57.2
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 7.1e-27 124.4 149 54.4
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.2e-26 123.6 140 56.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 1.6e-26 123.2 147 55.1
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.8e-25 119.8 145 56.6
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.3e-25 119.4 156 53.2
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 2.3e-25 119.4 131 58.8
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.0e-25 119.0 144 54.2
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 6.7e-25 117.9 128 57.8
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 1.5e-24 116.7 142 52.1
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 4.3e-24 115.2 141 54.6
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 7.4e-24 114.4 129 58.9
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 9.6e-24 114.0 151 53.0
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 9.6e-24 114.0 155 54.2
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 1.3e-23 113.6 146 53.4
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 1.6e-23 113.2 139 55.4
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.6e-23 113.2 117 58.1
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 2.1e-23 112.8 155 49.7
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 155 49.7
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 155 49.7
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.1e-23 112.8 155 49.7
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.8e-23 112.5 156 55.1
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.7e-23 112.1 141 56.7
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 3.7e-23 112.1 139 53.2
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 4.8e-23 111.7 149 54.4
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 6.2e-23 111.3 140 55.0
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 6.2e-23 111.3 144 51.4
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 8.2e-23 110.9 153 52.3
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 8.2e-23 110.9 146 52.1
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 8.2e-23 110.9 134 52.2
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.1e-22 110.5 146 52.1
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.1e-22 110.5 138 57.2
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.1e-22 110.5 134 56.0
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 1.4e-22 110.2 80 72.5
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.4e-22 110.2 150 51.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.8e-22 109.8 115 60.0
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 1.8e-22 109.8 157 47.1
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.8e-22 109.8 143 51.0
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 2.4e-22 109.4 154 52.6
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 2.4e-22 109.4 138 52.2
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 2.4e-22 109.4 80 72.5
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 3.1e-22 109.0 145 50.3
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 4.0e-22 108.6 141 51.1
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 4.0e-22 108.6 151 51.0
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 5.3e-22 108.2 134 50.0
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 5.3e-22 108.2 145 51.0
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 5.3e-22 108.2 146 52.1
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 6.9e-22 107.8 147 53.7
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 6.9e-22 107.8 147 53.7
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 6.9e-22 107.8 151 49.0
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 9.0e-22 107.5 88 68.2
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 9.0e-22 107.5 132 53.8
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.2e-21 107.1 148 50.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 1.2e-21 107.1 129 55.8
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 1.2e-21 107.1 158 50.6
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 1.5e-21 106.7 137 52.6
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.5e-21 106.7 140 55.7
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 2.0e-21 106.3 119 59.7
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.0e-21 106.3 144 53.5
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 2.0e-21 106.3 119 59.7
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 2.0e-21 106.3 119 59.7
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.0e-21 106.3 153 50.3
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.6e-21 105.9 144 52.8
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.6e-21 105.9 142 53.5
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.6e-21 105.9 148 50.0
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 2.6e-21 105.9 144 51.4
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 3.4e-21 105.5 141 51.1
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 3.4e-21 105.5 121 52.9
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 3.4e-21 105.5 147 48.3
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 3.4e-21 105.5 131 55.0
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 4.5e-21 105.1 128 55.5
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 4.5e-21 105.1 149 47.0
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 4.5e-21 105.1 155 50.3
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 4.5e-21 105.1 144 52.8
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 5.8e-21 104.8 131 55.0
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 5.8e-21 104.8 142 49.3
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 5.8e-21 104.8 142 48.6
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 5.8e-21 104.8 139 52.5
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 5.8e-21 104.8 149 51.0
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 5.8e-21 104.8 142 54.2
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 5.8e-21 104.8 127 54.3
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 7.6e-21 104.4 141 52.5
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 7.6e-21 104.4 84 67.9
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 7.6e-21 104.4 148 48.6
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 7.6e-21 104.4 91 67.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 1.3e-20 103.6 149 49.7
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.3e-20 103.6 145 48.3
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.3e-20 103.6 123 49.6
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.3e-20 103.6 113 59.3
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.7e-20 103.2 182 45.6
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 1.7e-20 103.2 146 48.6
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.7e-20 103.2 83 63.9
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 1.7e-20 103.2 126 57.9
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 2.2e-20 102.8 140 55.0
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.2e-20 102.8 121 56.2
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.9e-20 102.4 140 51.4
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.9e-20 102.4 133 53.4
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 3.8e-20 102.1 113 58.4
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 4.9e-20 101.7 139 54.0
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 4.9e-20 101.7 112 60.7
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 6.5e-20 101.3 139 54.0
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 6.5e-20 101.3 127 52.0
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 6.5e-20 101.3 127 55.9
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 8.4e-20 100.9 97 57.7
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.1e-19 100.5 144 49.3
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 1.1e-19 100.5 83 67.5
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 1.1e-19 100.5 112 55.4
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 1.4e-19 100.1 134 51.5
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 1.4e-19 100.1 176 42.6
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 2.5e-19 99.4 132 47.0
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 3.2e-19 99.0 139 51.8
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 4.2e-19 98.6 95 60.0
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 5.5e-19 98.2 144 47.9
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 7.1e-19 97.8 142 47.9
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 9.3e-19 97.4 143 50.3
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.2e-18 97.1 147 49.7
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 3.5e-18 95.5 106 56.6
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 3.5e-18 95.5 119 55.5
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 6.0e-18 94.7 148 48.6
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 7.9e-18 94.4 129 51.2
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 7.9e-18 94.4 123 50.4
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 1.3e-17 93.6 148 46.6
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.8e-17 93.2 176 43.2
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 2.3e-17 92.8 175 44.0
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 2.3e-17 92.8 119 52.9
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.0e-17 92.4 115 54.8
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 3.0e-17 92.4 65 72.3
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.0e-17 92.4 106 53.8
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 3.9e-17 92.0 63 71.4
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 3.9e-17 92.0 119 52.9
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 5.1e-17 91.7 76 59.2
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 5.1e-17 91.7 112 56.2
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.1e-16 90.5 90 58.9
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.1e-16 90.5 108 53.7
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 2.5e-16 89.4 99 55.6
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 3.3e-16 89.0 119 52.9
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 4.3e-16 88.6 112 52.7
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 4.3e-16 88.6 126 51.6
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 9.7e-16 87.4 112 53.6
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.3e-15 87.0 94 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 3.7e-15 85.5 88 60.2
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 3.7e-15 85.5 141 46.8
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 3.7e-15 85.5 122 51.6
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 3.7e-15 85.5 126 46.8
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 3.7e-15 85.5 111 55.0
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 8.2e-15 84.3 46 89.1
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 1.8e-14 83.2 95 52.6
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 2.4e-14 82.8 103 51.5
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 6.9e-14 81.3 99 53.5
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 9.0e-14 80.9 190 39.5
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 9.0e-14 80.9 73 57.5
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 8.5e-12 74.3 60 58.3
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.4e-11 73.6 100 49.0
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 2.7e-10 69.3 42 78.6
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 3.0e-09 65.9 79 54.4
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 3.7e-07 58.9 136 39.0
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 1.1e-06 57.4 82 39.0
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.1e-06 57.4 82 39.0
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 3.1e-06 55.8 76 43.4
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 3.1e-06 55.8 53 49.1
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 3.1e-06 55.8 143 33.6
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 3.1e-06 55.8 96 38.5
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 4.1e-06 55.5 85 40.0
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 5.3e-06 55.1 60 48.3
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-06 55.1 143 33.6
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.3e-06 55.1 143 33.6
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 5.3e-06 55.1 59 45.8
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 5.3e-06 55.1 118 37.3
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 5.3e-06 55.1 60 48.3
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 6.9e-06 54.7 60 46.7
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 6.9e-06 54.7 60 46.7
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 6.9e-06 54.7 125 34.4
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 9.1e-06 54.3 60 46.7
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 9.1e-06 54.3 144 34.0


User provided reference genes

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