Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 0.0e+00 1461.0 724 100.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.4e-293 1012.7 729 69.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.0e-292 1007.3 723 67.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 3.9e-291 1004.6 727 67.0
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 1.1e-285 986.5 698 68.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.3e-283 979.5 726 66.5
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 9.6e-282 973.4 730 65.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 4.8e-281 971.1 733 65.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.8e-280 969.1 738 64.8
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.0e-279 965.7 730 65.5
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 5.5e-277 957.6 725 64.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 9.3e-277 956.8 732 63.9
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.2e-276 956.4 736 64.4
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.7e-276 955.3 730 64.2
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.6e-276 954.5 737 64.5
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.8e-275 952.6 725 64.6
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.3e-275 952.2 725 64.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 2.3e-275 952.2 725 65.1
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.1e-275 951.0 725 64.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-274 949.9 737 64.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.5e-274 949.5 728 64.6
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 5.6e-274 947.6 721 62.8
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.4e-274 947.2 724 64.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-273 946.4 725 64.3
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 5.3e-272 941.0 729 63.5
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 6.9e-272 940.6 724 64.4
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 2.1e-268 929.1 721 62.7
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.7e-268 928.7 724 63.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 6.1e-268 927.5 731 63.3
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.9e-266 922.5 728 62.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.3e-266 921.8 727 63.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 3.3e-266 921.8 769 60.5
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 4.3e-266 921.4 727 62.0
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 9.7e-266 920.2 723 62.8
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.3e-265 919.8 723 62.1
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.2e-265 919.1 721 62.1
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 3.7e-265 918.3 731 62.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.4e-264 916.4 731 62.1
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 6.9e-264 914.1 723 62.4
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 6.9e-264 914.1 727 61.8
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 9.0e-264 913.7 730 61.6
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.2e-263 913.3 723 61.1
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.2e-263 913.3 729 61.7
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.6e-263 912.1 765 59.7
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 3.4e-263 911.8 725 62.3
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 4.5e-263 911.4 725 62.6
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.3e-262 909.8 721 61.4
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 2.2e-262 909.1 727 61.2
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 5.0e-262 907.9 723 61.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 5.5e-261 904.4 728 62.2
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 7.2e-261 904.0 745 59.9
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 9.4e-261 903.7 724 60.8
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.1e-260 902.5 729 61.5
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 3.0e-259 898.7 735 61.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.5e-258 896.3 723 60.7
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.5e-258 896.3 723 60.6
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 2.0e-258 896.0 723 60.9
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 4.3e-258 894.8 722 60.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.7e-257 892.9 729 60.9
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 3.7e-257 891.7 786 57.1
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.8e-257 891.3 725 59.9
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 5.3e-256 887.9 727 59.6
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.1e-256 887.1 751 61.3
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 5.0e-254 881.3 727 60.4
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 8.5e-254 880.6 690 63.2
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.1e-253 880.2 731 62.2
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.4e-253 879.8 727 59.1
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.8e-251 872.8 725 59.2
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 4.4e-250 868.2 708 60.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 2.0e-247 859.4 676 62.4
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 3.2e-245 852.0 723 59.2
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 4.2e-245 851.7 707 59.7
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 3.0e-243 845.5 762 59.4
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 2.3e-235 819.3 649 62.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.5e-231 805.4 721 56.0
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 1.9e-229 799.7 725 55.4
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 6.1e-228 794.7 723 56.4
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.2e-223 780.4 705 56.2
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.6e-223 780.0 618 63.4
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.9e-222 775.8 727 54.1
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.1e-221 773.9 609 61.4
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 6.8e-219 764.6 671 59.3
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.6e-218 762.7 605 61.3
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 9.8e-218 760.8 721 53.0
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.9e-214 749.2 728 55.8
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 6.8e-211 738.0 607 59.1
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.4e-208 730.3 636 59.4
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.1e-208 728.8 818 50.1
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 6.8e-203 711.4 617 59.2
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 8.1e-196 688.0 618 55.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 7.6e-194 681.4 637 54.3
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.4e-192 675.2 620 56.6
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.7e-191 672.9 495 65.5
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.0e-190 669.5 500 65.2
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 7.6e-186 654.8 456 68.4
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.3e-174 616.7 526 59.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.9e-170 601.3 450 62.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.5e-165 587.4 740 45.5
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.3e-165 586.3 425 67.3
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.7e-161 573.9 736 45.1
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.4e-152 544.3 605 46.9
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.2e-132 477.2 583 44.4
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 3.7e-132 476.5 427 55.7
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 6.5e-121 439.1 839 35.3
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 6.3e-116 422.5 632 41.8
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.4e-110 404.8 383 54.3
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.1e-107 393.7 542 41.7
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.2e-107 392.1 288 64.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-106 391.3 482 44.8
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 5.2e-102 376.3 347 57.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.7e-97 361.3 470 44.0
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.0e-89 334.0 225 68.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.0e-81 308.9 228 67.5
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.1e-63 246.1 188 62.2
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.1e-62 245.7 670 31.3
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.9e-58 229.6 126 74.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.1e-56 225.7 256 45.3
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.3e-55 222.2 316 41.5
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.7e-52 211.8 126 75.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.1e-50 204.9 270 40.4
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.6e-47 195.3 126 72.2
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.6e-45 188.0 218 48.6
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-40 170.2 142 63.4
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.7e-33 146.7 169 47.9
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.3e-32 144.1 114 55.3
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 5.9e-29 133.7 131 51.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.5e-24 119.0 103 55.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.0e-24 118.6 108 56.5
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.5e-21 109.0 105 50.5
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.7e-20 105.5 75 66.7
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 9.4e-19 99.8 66 63.6
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.1e-16 92.8 286 29.7
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 3.1e-14 84.7 85 51.8
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.2e-13 82.8 60 56.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 1.9e-11 75.5 88 43.2
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 6.1e-10 70.5 60 56.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.8e-09 68.9 44 65.9
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.0e-09 68.2 44 65.9
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.7e-07 62.4 43 60.5
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 3.7e-07 61.2 39 66.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 3.1e-06 58.2 161 31.1
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 4.1e-06 57.8 118 32.2
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 4.1e-06 57.8 123 35.0
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 5.3e-06 57.4 84 36.9
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 7.0e-06 57.0 106 34.9
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 7.0e-06 57.0 154 29.9
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 7.0e-06 57.0 71 39.4
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 9.1e-06 56.6 71 36.6
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 9.1e-06 56.6 71 36.6
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 9.1e-06 56.6 143 29.4
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 9.1e-06 56.6 146 30.1


User provided reference genes

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