Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 9.6e-167 590.1 303 100.0
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.3e-142 510.0 303 83.8
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 84.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.5e-135 486.5 303 79.9
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.5e-135 486.5 303 81.5
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.3e-135 485.3 303 81.5
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.3e-135 485.0 303 80.5
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 7.4e-135 484.2 299 80.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.7e-135 483.8 300 80.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 9.7e-135 483.8 303 81.5
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 9.7e-135 483.8 300 81.3
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.2e-134 482.6 303 79.5
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.7e-134 481.9 300 81.3
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 6.3e-134 481.1 300 79.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 8.2e-134 480.7 303 81.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.1e-133 480.3 300 80.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.1e-133 480.3 303 80.2
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.1e-133 480.3 300 79.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.4e-133 479.9 300 80.3
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 4.1e-133 478.4 303 79.9
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 5.3e-133 478.0 300 81.7
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 6.9e-133 477.6 300 78.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 6.9e-133 477.6 302 78.8
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.1e-133 477.2 300 78.7
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.2e-132 476.9 301 78.7
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 1.5e-132 476.5 303 79.9
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.5e-132 476.5 301 78.7
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 79.5
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.6e-132 475.7 303 79.2
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 79.9
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 4.5e-132 474.9 303 79.2
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 5.9e-132 474.6 300 78.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 5.9e-132 474.6 303 80.9
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 5.9e-132 474.6 301 80.4
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 7.7e-132 474.2 301 79.1
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 7.7e-132 474.2 301 78.1
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 7.7e-132 474.2 303 79.2
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.0e-131 473.8 303 78.9
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.7e-131 473.0 300 80.0
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.7e-131 473.0 303 78.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 2.9e-131 472.2 302 77.8
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 2.9e-131 472.2 303 79.2
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.9e-131 472.2 303 79.5
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.8e-131 471.9 303 80.5
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 6.5e-131 471.1 301 80.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.5e-131 471.1 299 79.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 8.5e-131 470.7 302 77.5
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.1e-130 470.3 301 78.7
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.9e-130 469.5 303 79.5
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 2.5e-130 469.2 303 78.2
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 78.2
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 4.2e-130 468.4 303 77.9
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.2e-130 468.4 303 77.6
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 7.2e-130 467.6 316 76.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.2e-130 467.6 296 79.4
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.2e-130 467.6 300 78.3
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.4e-130 467.2 300 79.0
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 79.0
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.6e-129 466.5 299 78.9
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.1e-129 466.1 300 77.3
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.7e-129 465.7 303 78.9
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.7e-129 465.7 300 78.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.7e-129 465.7 300 78.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 2.7e-129 465.7 301 77.1
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 77.6
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 4.6e-129 464.9 300 79.3
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 7.9e-129 464.2 303 77.6
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.4e-128 463.4 303 77.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.3e-128 462.6 301 78.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 3.0e-128 462.2 303 77.6
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.9e-128 461.8 303 76.9
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 5.1e-128 461.5 305 77.7
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.1e-128 461.5 299 78.9
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 6.7e-128 461.1 300 78.3
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.5e-127 459.9 300 78.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 76.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 4.4e-127 458.4 299 76.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.7e-127 458.0 303 77.9
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 78.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 7.4e-127 457.6 302 78.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.4e-127 457.6 303 76.2
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 9.7e-127 457.2 300 77.7
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.3e-126 456.8 303 77.6
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.3e-126 456.8 303 78.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 78.1
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 78.2
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 78.1
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 76.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.2e-126 456.1 303 76.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-126 454.5 303 78.2
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 77.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 8.2e-126 454.1 302 77.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 77.6
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 8.2e-126 454.1 303 75.6
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.1e-125 453.8 303 77.2
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.8e-125 453.0 300 75.7
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 6.9e-125 451.1 303 73.3
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 9.1e-125 450.7 300 74.3
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.5e-124 449.9 303 74.9
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.0e-124 449.5 303 75.2
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 2.2e-123 446.0 301 76.1
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.1e-122 443.7 303 75.2
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 5.5e-122 441.4 340 68.8
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.2e-121 440.3 303 73.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.2e-121 440.3 300 74.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 7.9e-121 437.6 303 74.9
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.4e-120 436.8 303 73.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.3e-120 436.0 309 72.8
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 3.0e-120 435.6 302 73.5
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.1e-119 433.7 321 70.4
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.5e-119 433.3 316 71.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.8e-118 428.3 303 72.3
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-117 427.2 338 67.2
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 5.9e-116 421.4 259 79.2
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.7e-113 412.5 292 70.5
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 4.0e-112 408.7 249 81.9
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.5e-111 406.8 302 66.2
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-110 403.7 300 70.7
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 1.7e-110 403.3 340 61.5
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.1e-109 399.1 241 83.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 9.1e-109 397.5 312 69.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.7e-108 396.0 288 68.8
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 2.7e-108 396.0 292 68.2
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.0e-107 394.0 301 69.8
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 3.7e-102 375.6 299 63.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.3e-99 367.1 303 65.0
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.8e-97 359.4 305 61.6
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.2e-94 349.7 209 82.3
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 8.3e-94 347.8 289 58.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.0e-91 338.6 509 42.8
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 8.6e-91 337.8 209 80.4
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.6e-89 333.6 225 76.4
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.5e-87 327.0 300 60.0
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.1e-85 318.9 200 81.0
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 4.4e-79 298.9 246 67.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.9e-78 295.4 246 59.8
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 8.6e-75 284.6 293 50.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 8.9e-72 274.6 245 62.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 9.9e-63 244.6 154 82.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 5.4e-53 212.2 299 39.8
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 2.8e-49 199.9 297 38.4
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.9e-45 187.2 173 54.9
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.5e-42 177.6 121 74.4
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 3.5e-36 156.4 101 76.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.1e-34 151.4 199 48.7
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.5e-29 132.5 84 77.4
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 9.7e-26 121.7 84 71.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.7e-22 110.9 261 28.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 7.2e-21 105.5 87 67.8
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.2e-20 104.8 83 65.1
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.5e-18 97.8 144 38.2
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 4.3e-18 96.3 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.4e-18 95.5 161 38.5
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-17 94.7 63 73.0
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 6.9e-16 89.0 77 63.6
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 6.1e-12 75.9 121 42.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 7.7e-07 58.9 53 58.5
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-06 57.0 46 58.7


User provided reference genes

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