Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 8.5e-137 490.3 249 100.0
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.1e-86 323.9 221 76.0
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 9.9e-85 317.4 221 75.6
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.4e-83 313.5 196 78.6
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 4.1e-83 312.0 223 73.1
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.5e-82 308.9 224 72.3
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.6e-82 308.5 206 75.7
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.3e-81 307.0 205 75.6
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 1.7e-81 306.6 226 69.0
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.6e-81 304.7 221 72.4
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 8.6e-81 304.3 204 74.0
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.5e-80 303.5 223 70.0
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.9e-80 303.1 205 74.1
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 3.3e-80 302.4 232 69.8
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 7.3e-80 301.2 203 73.9
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 7.3e-80 301.2 191 79.1
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 7.3e-80 301.2 194 75.8
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.1e-79 299.7 227 68.3
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 3.6e-79 298.9 195 74.9
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 6.8e-78 294.7 210 70.5
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 8.9e-78 294.3 194 74.7
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.9e-78 294.3 227 69.2
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 8.9e-78 294.3 227 67.8
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 1.2e-77 293.9 229 66.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.0e-77 293.1 190 76.8
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 2.6e-77 292.7 223 69.1
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 3.4e-77 292.4 227 66.5
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.8e-77 291.6 199 73.9
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 9.9e-77 290.8 199 74.4
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 2.2e-76 289.7 178 81.5
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.2e-76 289.7 198 71.2
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.2e-76 289.7 200 71.0
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 4.9e-76 288.5 213 68.1
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 1.1e-75 287.3 195 73.3
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.1e-75 287.3 198 72.7
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 1.1e-75 287.3 215 68.4
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.4e-75 287.0 199 73.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.9e-75 286.6 189 76.2
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 2.4e-75 286.2 213 67.6
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 3.2e-75 285.8 197 69.5
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 3.2e-75 285.8 193 73.1
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 4.1e-75 285.4 197 73.6
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.1e-75 285.4 205 70.7
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 7.1e-75 284.6 200 72.5
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.1e-75 284.6 229 65.9
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-74 283.9 205 70.2
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.6e-74 283.5 201 72.1
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.6e-74 283.5 204 70.1
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 3.5e-74 282.3 200 72.0
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 4.6e-74 282.0 197 72.6
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 6.0e-74 281.6 198 70.2
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 6.0e-74 281.6 194 70.1
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.0e-73 280.8 193 68.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.3e-73 280.4 196 73.5
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.7e-73 280.0 216 68.1
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-73 279.3 212 65.1
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 3.0e-73 279.3 197 71.6
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 5.1e-73 278.5 216 66.2
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 6.6e-73 278.1 212 64.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.1e-72 277.3 200 69.0
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.5e-72 276.9 225 65.8
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.9e-72 276.6 194 69.6
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.5e-72 276.2 221 66.5
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.5e-72 276.2 188 76.1
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.3e-72 274.6 204 69.6
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 9.6e-72 274.2 175 76.0
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.2e-71 273.9 200 70.0
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.6e-71 273.5 206 68.4
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.1e-71 273.1 203 70.4
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.1e-71 273.1 206 69.9
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 2.1e-71 273.1 178 75.8
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 3.6e-71 272.3 197 71.6
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.2e-71 271.6 204 68.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 8.1e-71 271.2 197 67.0
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 8.1e-71 271.2 178 73.6
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.8e-70 270.0 207 64.7
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 9.0e-70 267.7 193 67.4
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 1.2e-69 267.3 193 68.4
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.4e-69 265.8 206 68.0
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 3.4e-69 265.8 217 63.1
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 4.4e-69 265.4 212 62.7
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 9.9e-69 264.2 210 63.3
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.3e-68 263.8 195 69.7
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.1e-67 260.8 194 65.5
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 2.4e-67 259.6 194 69.1
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 3.2e-67 259.2 195 68.7
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 4.2e-67 258.8 194 69.1
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 7.1e-67 258.1 189 67.2
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.2e-66 257.3 195 66.7
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.7e-65 253.4 286 52.4
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 9.6e-64 247.7 190 66.3
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 9.6e-64 247.7 197 62.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.1e-63 246.5 145 80.7
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.1e-62 244.2 190 64.2
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 8.4e-60 234.6 277 50.5
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.1e-58 229.9 144 75.0
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.7e-58 229.6 190 60.5
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.8e-55 219.5 218 52.8
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 8.1e-55 218.0 187 60.4
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 8.1e-55 218.0 218 52.8
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.4e-51 207.2 152 67.8
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-49 201.1 161 65.8
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.3e-48 196.1 153 64.7
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 4.3e-48 195.7 154 60.4
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.7e-40 167.9 98 80.6
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 4.8e-39 165.6 166 53.6
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.4e-38 164.1 166 52.4
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 4.5e-37 159.1 166 51.2
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.2e-35 152.9 98 74.5
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.2e-31 140.2 142 50.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.3e-28 131.0 79 77.2
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.5e-27 126.7 145 51.7
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 3.2e-27 126.3 79 77.2
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-26 124.4 78 76.9
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 2.1e-26 123.6 122 60.7
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.1e-26 122.1 79 74.7
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 4.5e-21 105.9 61 80.3
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 7.7e-21 105.1 155 41.9
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.3e-20 104.4 61 78.7
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-15 87.8 54 79.6
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.3e-15 87.8 77 54.5
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.0e-09 68.2 39 79.5
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.4e-09 67.8 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.2e-08 64.7 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.2e-08 64.7 39 76.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 2.0e-08 63.9 92 47.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 1.7e-07 60.8 48 66.7


User provided reference genes

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