Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 6.9e-109 397.5 231 100.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.6e-75 284.3 160 81.9
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.5e-74 282.7 222 65.8
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.8e-73 279.3 158 82.9
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.3e-72 276.2 160 80.6
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 4.0e-72 275.4 162 79.6
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.5e-71 273.5 149 83.9
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.4e-71 271.9 160 78.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.8e-71 270.8 159 79.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.3e-70 270.4 162 77.2
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.9e-70 269.2 147 83.7
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 3.7e-70 268.9 149 83.2
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.9e-70 268.5 149 82.6
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-70 268.5 165 75.8
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.9e-70 268.5 162 77.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 6.4e-70 268.1 164 75.6
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 6.4e-70 268.1 165 75.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 6.4e-70 268.1 159 78.6
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.3e-70 267.7 165 75.8
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 8.3e-70 267.7 164 76.8
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-69 267.3 162 75.3
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-69 267.3 162 75.3
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.1e-69 267.3 147 83.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.4e-69 266.9 162 75.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.4e-69 266.9 186 70.4
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.9e-69 266.5 149 81.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.2e-69 265.8 149 81.9
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.2e-69 265.8 217 62.7
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.2e-69 265.8 217 62.7
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.2e-69 265.8 217 62.7
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-69 265.8 149 81.9
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.2e-69 265.8 162 75.3
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.2e-69 265.8 159 78.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.1e-69 265.4 162 75.9
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 5.4e-69 265.0 149 82.6
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.4e-69 265.0 159 78.0
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.4e-69 265.0 149 81.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 7.0e-69 264.6 163 74.8
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 7.0e-69 264.6 166 75.3
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 9.2e-69 264.2 149 81.2
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 9.2e-69 264.2 164 74.4
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.2e-68 263.8 149 81.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.6e-68 263.5 149 80.5
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.6e-68 263.5 149 81.2
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.6e-68 263.5 149 81.2
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.6e-68 263.5 164 75.0
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.0e-68 263.1 161 77.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.0e-68 263.1 152 78.9
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 2.0e-68 263.1 150 82.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.0e-68 263.1 165 75.2
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 2.7e-68 262.7 161 77.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 2.7e-68 262.7 162 75.9
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.7e-68 262.7 149 81.2
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.5e-68 262.3 149 80.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 3.5e-68 262.3 149 79.9
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.0e-68 261.5 165 74.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 6.0e-68 261.5 165 73.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-67 260.8 149 79.2
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.3e-67 260.4 161 75.8
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-67 260.4 211 60.7
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.3e-67 260.4 166 72.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.3e-67 260.4 150 80.0
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.7e-67 260.0 224 59.8
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-67 260.0 149 79.2
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.7e-67 260.0 156 78.2
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.7e-67 260.0 149 78.5
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.3e-67 259.6 217 63.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.3e-67 259.6 149 81.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-67 259.6 142 84.5
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.3e-67 259.6 147 79.6
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.3e-67 259.6 162 75.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.3e-67 259.6 147 80.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.3e-67 259.6 217 61.3
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.0e-67 259.2 149 79.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.0e-67 259.2 147 81.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.9e-67 258.8 211 60.7
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 3.9e-67 258.8 148 79.7
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.9e-67 258.8 159 77.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.0e-67 258.5 166 73.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 8.6e-67 257.7 220 59.5
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 8.6e-67 257.7 156 74.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-66 257.3 212 61.3
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.1e-66 257.3 150 80.0
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.1e-66 257.3 150 80.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.1e-66 257.3 144 81.9
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.5e-66 256.9 218 60.1
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.5e-66 256.9 149 78.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-66 256.9 165 75.2
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.9e-66 256.5 149 79.2
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.9e-66 256.5 147 79.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.5e-66 256.1 141 81.6
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.5e-66 256.1 166 72.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.5e-66 256.1 156 74.4
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.3e-66 255.8 142 79.6
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 4.3e-66 255.4 166 72.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.6e-66 255.0 162 72.8
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 5.6e-66 255.0 150 78.7
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.3e-66 254.6 153 78.4
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 7.3e-66 254.6 149 77.2
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.6e-65 253.4 150 78.7
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.6e-65 253.4 150 78.7
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.1e-65 253.1 147 76.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.8e-65 252.7 162 74.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 2.8e-65 252.7 147 77.6
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.8e-65 252.7 147 76.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.8e-65 252.7 149 79.9
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.7e-65 251.9 170 71.2
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.2e-65 251.5 126 92.1
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 6.2e-65 251.5 147 74.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 8.0e-65 251.1 147 75.5
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.8e-64 250.0 148 76.4
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 3.1e-64 249.2 150 77.3
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.0e-63 246.5 143 77.6
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.0e-63 246.5 147 73.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.4e-63 245.7 149 76.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.4e-63 245.7 149 76.5
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 7.0e-61 238.0 126 85.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.0e-59 234.2 155 71.6
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.0e-59 234.2 155 71.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.7e-59 233.4 152 70.4
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.1e-58 230.7 126 84.1
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 4.3e-58 228.8 168 65.5
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 5.6e-58 228.4 153 71.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 7.3e-58 228.0 157 69.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 8.9e-56 221.1 149 71.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.4e-53 213.0 155 67.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.2e-53 212.6 170 64.1
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.1e-52 209.9 152 67.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.1e-52 209.9 154 66.9
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.9e-51 205.7 146 68.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 5.6e-50 201.8 102 87.3
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 5.6e-50 201.8 103 86.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 9.5e-50 201.1 157 63.7
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 9.5e-50 201.1 105 85.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.5e-50 201.1 105 85.7
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 3.6e-49 199.1 105 84.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.4e-48 196.4 157 60.5
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.1e-48 196.1 103 83.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.0e-48 195.7 103 86.4
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 3.4e-47 192.6 102 85.3
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 4.4e-47 192.2 124 75.0
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.2e-46 189.9 103 79.6
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.6e-44 183.7 103 80.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.3e-42 175.6 103 74.8
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 3.6e-41 172.6 120 68.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 9.9e-39 164.5 154 56.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.2e-31 141.0 103 64.1
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 5.8e-31 138.7 103 66.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 6.7e-19 98.6 83 60.2
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 4.6e-12 75.9 48 72.9
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.8e-11 73.9 47 74.5
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 3.9e-11 72.8 47 74.5


User provided reference genes

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