Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.9e-98 362.5 177 100.0
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 8.0e-89 330.5 177 91.0
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.8e-85 319.3 177 87.6
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.0e-83 311.2 177 84.7
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 6.6e-83 310.8 177 83.6
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.5e-82 309.7 177 83.1
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.9e-82 309.3 177 82.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.5e-82 308.9 167 89.2
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.2e-82 307.4 168 88.1
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 7.2e-82 307.4 177 80.8
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 9.5e-82 307.0 177 83.6
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 4.7e-81 304.7 167 85.6
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 4.7e-81 304.7 177 81.4
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 6.1e-81 304.3 166 87.3
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-80 303.1 175 82.9
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 4.0e-80 301.6 177 80.2
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 5.2e-80 301.2 177 82.5
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.2e-80 301.2 177 82.5
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 8.9e-80 300.4 177 80.8
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 8.9e-80 300.4 166 88.0
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 8.9e-80 300.4 177 81.9
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 8.9e-80 300.4 177 80.2
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 79.7
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 2.6e-79 298.9 175 80.0
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 3.4e-79 298.5 177 81.4
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.4e-79 298.5 177 81.4
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.4e-79 298.5 177 81.4
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 4.4e-79 298.1 177 80.2
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 80.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 81.9
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 7.5e-79 297.4 177 80.8
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 9.8e-79 297.0 177 81.4
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.2e-78 295.8 177 81.9
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 2.8e-78 295.4 177 78.5
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.7e-78 295.0 177 80.8
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 4.9e-78 294.7 177 80.2
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 6.3e-78 294.3 177 79.1
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 6.3e-78 294.3 177 79.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 79.7
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 81.9
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 8.3e-78 293.9 177 78.0
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.1e-77 293.5 182 79.7
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.1e-77 293.5 177 80.2
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-77 293.1 177 80.8
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.8e-77 292.7 177 78.0
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.8e-77 292.7 178 77.5
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.8e-77 292.7 178 79.8
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 81.4
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 81.4
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.4e-77 292.4 178 78.7
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 9.2e-77 290.4 177 80.2
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.2e-76 290.0 177 77.4
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.2e-76 290.0 177 79.7
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.0e-76 289.3 177 79.1
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-76 288.9 161 83.9
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.5e-76 288.1 177 77.4
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 5.9e-76 287.7 181 76.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 5.9e-76 287.7 177 78.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 7.8e-76 287.3 168 83.3
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.0e-75 287.0 177 77.4
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.3e-75 286.6 177 79.7
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.3e-75 286.6 168 80.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.3e-75 286.6 177 78.5
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.7e-75 286.2 177 78.5
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.9e-75 285.4 181 76.2
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 8.6e-75 283.9 177 76.8
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.1e-74 283.5 177 77.4
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-74 283.5 175 74.9
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-74 283.1 170 78.8
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.5e-74 283.1 175 74.9
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.5e-74 283.1 165 83.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.9e-74 282.7 175 74.9
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.9e-74 282.7 171 78.4
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.5e-74 282.3 175 74.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.5e-74 282.3 177 78.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 7.3e-74 280.8 177 76.8
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 7.3e-74 280.8 177 74.6
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.2e-73 280.0 177 76.8
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-73 279.6 177 76.3
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.1e-73 279.3 175 75.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 2.1e-73 279.3 177 75.1
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.8e-73 278.9 177 75.1
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.6e-73 278.5 172 79.7
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 6.1e-73 277.7 167 80.8
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 8.0e-73 277.3 168 80.4
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 8.0e-73 277.3 181 75.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 1.0e-72 276.9 175 75.4
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.4e-72 276.6 177 75.7
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.3e-72 275.8 170 77.1
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.3e-72 275.8 175 73.7
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.0e-72 275.0 170 77.1
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 4.0e-72 275.0 177 75.1
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.2e-72 274.6 177 74.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 5.2e-72 274.6 169 78.1
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 6.8e-72 274.2 170 76.5
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 6.8e-72 274.2 170 76.5
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 6.8e-72 274.2 170 76.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 6.8e-72 274.2 178 72.5
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.5e-71 273.1 170 75.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.6e-71 272.3 168 74.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.6e-71 272.3 173 75.7
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.4e-71 271.9 177 72.9
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 4.4e-71 271.6 167 77.8
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.8e-71 271.2 171 73.1
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 5.8e-71 271.2 177 75.1
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 5.8e-71 271.2 169 77.5
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.9e-70 268.9 177 71.2
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 3.7e-70 268.5 176 73.9
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.9e-70 268.1 229 62.4
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.4e-70 267.7 178 70.8
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.4e-70 267.7 167 74.3
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 8.3e-70 267.3 156 79.5
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.3e-70 267.3 177 72.3
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.1e-69 266.9 175 70.9
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.4e-69 266.5 167 73.7
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.4e-69 266.5 173 72.8
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.9e-69 266.2 165 77.0
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 5.4e-69 264.6 165 76.4
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 5.4e-69 264.6 177 70.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 7.0e-69 264.2 177 70.1
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.6e-68 263.1 173 71.7
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.3e-67 260.0 157 77.1
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.3e-67 259.2 155 79.4
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.0e-67 258.8 170 70.0
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.1e-66 256.9 176 71.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 3.3e-66 255.4 167 74.9
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 7.3e-66 254.2 177 65.5
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 9.5e-66 253.8 166 71.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.8e-65 252.3 168 70.2
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 8.0e-65 250.8 175 67.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.8e-64 249.6 159 74.2
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 3.1e-64 248.8 170 68.8
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.2e-64 248.1 174 66.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 3.1e-56 222.2 168 63.7
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 6.8e-56 221.1 172 62.8
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 3.0e-51 205.7 124 80.6
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 3.0e-51 205.7 124 80.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 8.6e-51 204.1 124 76.6
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 2.5e-50 202.6 139 70.5
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.6e-49 199.9 124 77.4
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.4e-48 196.8 124 75.0
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.7e-46 189.9 115 78.3
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.8e-46 188.7 191 50.3
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.3e-43 180.3 117 76.9
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.7e-38 163.3 173 48.0
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 7.1e-37 157.9 84 83.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.1e-35 151.8 99 72.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.9e-34 149.8 106 67.9
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.9e-34 149.8 103 69.9
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 4.0e-32 142.1 95 72.6
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.6e-25 120.2 167 40.1
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.4e-24 116.3 109 52.3
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.6e-23 112.8 60 81.7
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 8.4e-22 107.8 127 47.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-20 104.0 95 55.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 3.5e-20 102.4 162 36.4
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 8.7e-19 97.8 54 83.3
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.9e-18 96.7 91 51.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 9.6e-18 94.4 143 37.1
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 8.2e-17 91.3 52 82.7
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 7.6e-15 84.7 48 81.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 5.0e-14 82.0 50 78.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-11 73.9 63 58.7
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 3.8e-06 55.8 35 68.6


User provided reference genes

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