Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.5e-198 695.3 364 100.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.3e-146 522.7 355 76.1
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.6e-146 520.8 348 79.3
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.3e-145 518.5 361 75.3
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.8e-144 515.8 348 77.9
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 4.7e-144 515.0 362 74.3
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.4e-143 513.5 348 77.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.1e-143 512.3 348 76.7
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 4.0e-143 511.9 354 76.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 4.0e-143 511.9 348 75.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 5.2e-143 511.5 348 77.6
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 6.8e-143 511.1 348 75.6
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 8.9e-143 510.8 348 76.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.2e-142 510.4 348 75.3
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 5.8e-142 508.1 348 75.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 7.5e-142 507.7 347 76.1
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 9.8e-142 507.3 348 75.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.7e-141 506.5 348 75.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.9e-141 505.8 348 75.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.7e-141 505.4 348 75.0
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.7e-141 505.4 350 76.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.7e-141 505.4 348 75.9
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 3.7e-141 505.4 348 75.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.4e-140 503.4 348 74.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 5.4e-140 501.5 347 75.2
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.0e-140 501.1 348 74.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 9.2e-140 500.7 348 75.0
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.0e-139 499.6 348 75.3
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.7e-139 499.2 348 75.3
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 7.8e-139 497.7 348 75.0
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.7e-138 496.5 348 72.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.3e-138 496.1 352 73.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.3e-138 496.1 348 75.6
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 8.6e-138 494.2 349 75.1
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-137 493.8 348 73.6
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.3e-137 492.3 349 73.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 7.3e-137 491.1 349 74.2
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.2e-136 490.3 348 73.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.1e-136 489.6 349 72.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 2.8e-136 489.2 348 73.0
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.6e-136 488.8 348 73.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.0e-136 487.6 337 74.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.1e-135 487.3 348 73.6
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.4e-135 486.9 348 73.3
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-135 486.1 337 75.1
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 3.1e-135 485.7 362 69.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 3.1e-135 485.7 348 72.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.2e-135 485.0 354 70.9
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.8e-135 484.6 348 71.8
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 5.8e-134 481.5 348 71.8
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.7e-133 479.9 350 71.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-133 479.6 348 71.6
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.7e-133 478.8 347 71.8
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 6.4e-133 478.0 350 70.9
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 8.3e-133 477.6 348 71.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.9e-132 476.5 366 69.7
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-132 476.1 369 69.4
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 3.2e-132 475.7 348 71.3
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.1e-132 475.3 351 69.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 7.0e-132 474.6 349 72.2
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.1e-131 473.0 369 69.1
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-131 472.6 369 68.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-131 472.6 351 70.4
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-131 472.6 351 70.4
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 3.5e-131 472.2 348 71.0
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.3e-130 469.5 349 70.8
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-130 468.8 369 68.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 3.9e-130 468.8 347 70.3
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 8.6e-130 467.6 348 71.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-129 467.2 355 70.1
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.5e-129 466.1 348 70.1
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.5e-129 466.1 348 70.7
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 3.3e-129 465.7 349 70.2
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.3e-129 465.3 360 70.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.2e-128 463.8 347 69.7
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.2e-128 461.5 350 70.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 8.1e-128 461.1 349 69.3
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.1e-127 460.7 348 69.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-127 459.9 347 68.9
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.3e-127 459.5 353 69.7
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 3.1e-127 459.1 350 69.1
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 4.0e-127 458.8 351 68.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 5.2e-127 458.4 349 71.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.8e-126 454.9 348 71.3
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.7e-125 453.4 349 69.3
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 7.1e-124 448.0 354 67.2
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 9.2e-124 447.6 352 67.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 1.2e-123 447.2 350 68.3
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.2e-123 447.2 350 68.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 1.2e-123 447.2 350 68.3
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.7e-123 446.0 352 67.9
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.6e-123 445.3 353 67.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 6.0e-123 444.9 352 67.6
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.3e-122 443.7 353 67.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.1e-122 441.8 350 66.3
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 8.6e-122 441.0 352 67.0
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.5e-121 439.5 350 66.0
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.3e-121 438.7 352 66.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-120 437.2 350 65.7
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 2.1e-120 436.4 350 64.0
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.8e-120 436.0 347 66.0
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.6e-120 435.6 350 67.7
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 4.7e-120 435.3 350 67.7
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.4e-119 433.7 351 66.4
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.8e-119 433.3 312 73.7
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.8e-119 433.3 350 64.3
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 5.2e-119 431.8 350 67.1
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.0e-118 429.9 355 66.2
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 9.9e-118 427.6 350 65.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 6.9e-111 404.8 369 60.7
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 9.0e-111 404.4 354 61.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.6e-110 402.9 356 60.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.4e-110 402.5 363 59.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 9.9e-110 401.0 362 61.9
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 4.2e-108 395.6 352 62.5
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 9.3e-108 394.4 349 62.5
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 6.6e-106 388.3 297 68.0
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 8.7e-106 387.9 352 60.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.4e-100 369.8 359 55.7
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.3e-97 359.4 348 57.5
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.1e-96 356.7 339 58.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.5e-94 349.0 271 66.1
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.7e-90 334.7 339 56.3
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.6e-86 321.6 299 61.2
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.6e-83 312.4 226 70.4
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 6.1e-83 312.0 387 48.3
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 2.3e-82 310.1 256 61.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 3.9e-82 309.3 389 48.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.4e-79 300.8 265 59.6
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.4e-78 296.2 400 44.8
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.3e-64 251.1 357 43.4
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 9.7e-57 224.9 434 36.6
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.6e-51 207.6 143 76.9
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.8e-42 177.6 209 47.8
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.3e-42 177.2 141 68.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.7e-40 169.9 173 56.1
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.7e-38 163.7 124 71.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.9e-32 143.7 368 33.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.9e-28 131.0 166 43.4
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.3e-28 129.8 149 51.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 5.8e-25 119.4 155 48.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 8.3e-24 115.5 88 70.5
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-23 114.0 138 51.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-22 109.8 120 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.0e-21 106.3 138 46.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.6e-19 101.3 83 62.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-16 91.7 82 56.1
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.9e-16 90.5 99 53.5
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-16 90.1 127 47.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 8.3e-16 89.0 127 47.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-14 84.3 82 53.7
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 7.8e-14 82.4 125 44.8
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 7.8e-14 82.4 106 44.3
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.7e-13 81.3 49 83.7
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 8.6e-13 79.0 51 66.7
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 9.5e-12 75.5 82 43.9
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.1e-11 74.3 39 89.7
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.6e-11 73.6 78 55.1
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 2.3e-10 70.9 110 43.6
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 6.8e-10 69.3 42 85.7
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.8e-09 66.2 51 58.8
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.2e-07 60.5 100 42.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 5.4e-07 59.7 36 83.3
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 7.1e-07 59.3 38 76.3
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 2.7e-06 57.4 38 73.7


User provided reference genes

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