Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 3.9e-247 857.8 477 100.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 4.7e-152 542.0 434 65.9
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 4.9e-149 531.9 492 61.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.0e-142 510.0 491 60.9
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 5.2e-135 485.3 442 57.7
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.0e-134 483.4 433 58.4
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.8e-133 479.2 438 58.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 8.4e-133 478.0 437 57.7
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 4.1e-132 475.7 487 56.7
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.9e-129 466.8 440 53.9
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 2.1e-128 463.4 435 56.6
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.6e-128 462.6 429 57.1
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 5.8e-126 455.3 434 56.2
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 9.9e-126 454.5 441 52.8
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.3e-125 454.1 435 54.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.3e-125 454.1 442 54.3
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.7e-125 453.8 398 56.8
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-124 449.1 441 51.7
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 7.1e-124 448.4 403 52.9
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 7.1e-124 448.4 440 54.8
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 1.2e-123 447.6 488 52.0
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 2.1e-123 446.8 448 53.6
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 6.0e-123 445.3 438 52.3
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.7e-122 443.7 445 52.1
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 3.0e-122 443.0 428 53.7
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 8.7e-122 441.4 415 55.9
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.7e-122 441.4 405 53.8
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 8.7e-122 441.4 443 53.3
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 8.7e-122 441.4 476 50.8
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.5e-121 440.7 426 53.8
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.5e-121 440.7 487 50.5
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 4.3e-121 439.1 436 54.8
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 9.6e-121 438.0 438 52.1
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 9.6e-121 438.0 422 54.3
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 1.6e-120 437.2 447 54.1
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 4.8e-120 435.6 432 52.8
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.4e-119 434.1 441 52.2
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.4e-119 433.3 478 52.9
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 3.1e-119 433.0 442 52.5
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 9.0e-119 431.4 434 51.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 5.8e-118 428.7 449 53.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 9.9e-118 427.9 425 52.0
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.3e-117 427.6 428 52.6
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 3.8e-117 426.0 441 53.7
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.1e-116 424.5 443 50.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.4e-116 424.1 422 54.0
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-116 423.7 391 52.9
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 4.2e-116 422.5 484 49.6
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.6e-115 420.6 392 53.3
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 6.0e-115 418.7 473 48.8
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.3e-114 417.5 433 51.5
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 1.1e-113 414.5 399 51.9
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.1e-113 414.5 429 49.4
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.1e-113 414.5 429 49.4
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.9e-113 413.7 421 54.4
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 7.4e-113 411.8 423 51.3
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 9.6e-113 411.4 434 47.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 9.6e-113 411.4 381 52.5
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.3e-112 411.0 358 58.9
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 3.6e-112 409.5 480 45.2
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.8e-112 409.1 425 51.3
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 8.1e-112 408.3 434 49.1
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.1e-111 407.9 480 45.2
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.1e-111 407.9 390 52.8
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.4e-111 407.5 434 47.2
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.4e-111 407.5 434 47.2
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 6.9e-111 405.2 416 50.5
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.2e-110 404.4 438 48.9
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 3.4e-110 402.9 430 49.8
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 3.4e-110 402.9 388 53.1
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 5.8e-110 402.1 421 50.4
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 5.8e-110 402.1 428 49.1
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 3.8e-109 399.4 432 50.5
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 4.2e-108 396.0 428 47.9
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.3e-108 394.8 354 57.1
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.3e-108 394.8 354 57.1
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.2e-107 394.4 366 53.3
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 2.7e-107 393.3 408 50.5
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 7.9e-107 391.7 409 50.4
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 9.6e-105 384.8 420 48.3
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.3e-104 384.4 352 55.4
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.6e-104 384.0 358 55.3
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 9.0e-103 378.3 347 53.6
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 5.8e-102 375.6 425 48.9
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.0e-101 374.8 344 55.5
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 9.3e-100 368.2 349 54.2
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 6.7e-98 362.1 330 55.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 9.6e-97 358.2 382 46.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 9.0e-95 351.7 338 53.8
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.5e-94 350.9 359 51.8
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.9e-92 344.0 462 42.2
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.2e-92 342.8 270 61.5
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 3.3e-89 333.2 342 52.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 3.2e-84 316.6 335 49.6
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 9.7e-81 305.1 312 57.1
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.1e-63 246.9 439 35.5
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 6.5e-61 239.2 407 34.2
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.1e-55 221.9 316 38.9
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 7.0e-55 219.2 382 35.3
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 4.5e-54 216.5 182 56.6
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.5e-52 211.5 341 36.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.7e-45 188.0 192 49.0
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 2.9e-45 187.2 297 37.7
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 5.6e-44 183.0 441 33.8
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.3e-36 156.8 381 29.4
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.4e-33 147.1 125 60.8
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.3e-32 145.2 129 58.1
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.9e-32 144.1 125 60.8
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 9.5e-28 129.0 203 38.4
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 9.0e-10 69.3 75 60.0
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.5e-09 68.6 86 55.8
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.5e-09 68.6 86 51.2
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.4e-09 67.4 85 51.8
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 5.8e-09 66.6 82 46.3
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.6e-09 66.2 85 50.6
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.8e-08 63.9 64 45.3
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 9.3e-07 59.3 78 53.8
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.2e-06 58.9 56 48.2


User provided reference genes

Program Settings