Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 4.2e-178 627.9 307 100.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 7.7e-148 527.3 301 81.7
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.5e-146 523.1 301 80.7
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.4e-144 516.5 309 78.0
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 6.8e-144 514.2 308 78.6
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.4e-143 511.9 309 79.0
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.4e-143 511.9 297 80.5
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.7e-142 509.6 305 77.4
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 4.9e-142 508.1 305 77.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 6.3e-142 507.7 303 77.9
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.3e-142 507.7 307 78.2
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 8.3e-142 507.3 305 77.4
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.4e-141 505.8 303 78.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 2.4e-141 505.8 303 76.6
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 3.1e-141 505.4 301 78.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 5.4e-141 504.6 301 78.1
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.6e-140 503.1 301 78.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 2.0e-140 502.7 310 77.1
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.5e-140 501.9 301 77.1
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.7e-140 500.7 301 77.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.3e-139 500.0 298 78.5
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 3.8e-139 498.4 307 76.2
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 3.8e-139 498.4 305 76.4
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 6.6e-139 497.7 302 75.8
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 6.6e-139 497.7 300 78.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 8.6e-139 497.3 302 76.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.5e-138 496.5 307 74.9
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.9e-138 496.1 305 76.4
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.5e-138 495.7 301 76.4
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 3.3e-138 495.4 303 76.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.3e-138 495.4 305 77.7
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 3.3e-138 495.4 302 76.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.3e-138 495.4 301 75.1
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.3e-138 495.0 307 74.3
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.1e-137 492.7 305 75.7
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.8e-137 492.3 301 75.7
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 3.6e-137 491.9 303 77.2
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 3.6e-137 491.9 307 76.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 4.7e-137 491.5 304 75.3
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.0e-136 490.3 304 76.0
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.3e-136 489.2 308 74.4
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 3.0e-136 488.8 301 74.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 5.2e-136 488.0 307 74.9
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 6.8e-136 487.6 302 74.5
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.2e-135 486.9 304 74.7
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.2e-135 486.9 301 74.1
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.5e-135 486.5 311 75.6
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 2.0e-135 486.1 303 75.9
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 3.4e-135 485.3 307 74.9
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.4e-135 485.3 300 76.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.4e-135 485.0 300 75.7
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.7e-134 483.0 303 74.3
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.9e-134 482.3 301 74.4
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.9e-134 481.5 305 74.8
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 6.4e-134 481.1 303 74.3
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 6.4e-134 481.1 303 73.3
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.4e-133 479.9 306 72.9
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 2.4e-133 479.2 305 74.8
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 3.2e-133 478.8 310 72.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.2e-133 478.8 303 74.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 4.1e-133 478.4 306 72.9
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 1.2e-132 476.9 308 72.7
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.2e-132 476.9 308 72.7
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.6e-132 476.5 309 72.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.6e-132 476.5 309 72.5
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.6e-132 476.5 300 74.3
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.7e-132 475.7 305 73.4
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.7e-132 475.7 308 72.7
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.7e-132 475.7 309 73.5
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.5e-132 475.3 307 73.0
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.6e-132 474.9 305 73.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.6e-132 474.9 303 73.9
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.6e-132 474.9 306 73.5
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 4.6e-132 474.9 303 74.3
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 7.8e-132 474.2 309 71.8
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 5.0e-131 471.5 308 71.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 8.6e-131 470.7 379 62.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-130 470.3 309 71.8
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.1e-130 470.3 314 70.7
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.5e-130 469.9 305 73.1
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.5e-130 469.2 304 72.4
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.3e-130 468.4 308 70.5
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 4.3e-130 468.4 304 71.4
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.6e-129 465.3 305 70.2
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 6.2e-129 464.5 377 62.1
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.3e-128 462.6 302 70.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 6.8e-128 461.1 306 70.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 6.8e-128 461.1 299 71.2
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.9e-128 460.7 303 70.6
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 4.4e-127 458.4 305 70.8
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.8e-127 458.0 305 70.2
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 5.8e-127 458.0 302 72.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 9.8e-127 457.2 314 69.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 4.9e-126 454.9 305 73.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.1e-125 453.8 302 71.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 3.5e-124 448.7 339 65.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.6e-124 448.4 327 65.7
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 2.5e-122 442.6 309 67.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.5e-122 440.7 312 68.9
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.6e-121 438.7 307 66.4
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 4.0e-120 435.3 307 67.1
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 6.4e-118 427.9 307 68.4
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 3.2e-117 425.6 307 67.8
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 7.1e-117 424.5 271 72.3
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.7e-116 422.5 267 74.5
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 5.1e-107 391.7 262 70.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 8.1e-105 384.4 265 68.7
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.3e-98 362.1 238 70.6
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 8.1e-97 357.8 302 53.3
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 7.6e-95 351.3 296 58.1
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 6.4e-94 348.2 265 64.2
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.9e-90 336.7 216 72.2
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 3.3e-90 335.9 291 56.4
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.6e-89 333.6 201 78.1
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-88 330.9 210 71.9
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.0e-87 326.6 301 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 5.8e-87 325.1 303 51.8
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.3e-78 297.4 177 79.1
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 6.0e-76 288.5 177 76.3
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 7.9e-68 261.5 237 50.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.1e-66 257.7 179 70.9
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.8e-64 250.4 181 69.6
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.7e-62 243.8 143 77.6
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 4.1e-56 222.6 170 61.8
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.5e-53 213.4 186 54.3
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.6e-52 209.5 126 75.4
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 3.3e-50 203.0 130 74.6
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.5e-46 188.7 131 67.2
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 8.5e-46 188.3 107 83.2
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 7.5e-42 175.3 136 61.0
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 3.1e-40 169.9 104 77.9
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.7e-36 156.0 145 55.2
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.3e-35 153.7 100 70.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.0e-35 152.9 109 68.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 4.5e-31 139.4 103 63.1
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.1e-20 104.0 68 66.2
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.2e-17 94.0 52 76.9
EL10Ac9g22444 Beta vulgaris HOM05D005736 ORTHO05D090219 5.4e-08 62.8 39 69.2
EL10Ac5g11505 Beta vulgaris HOM05D005736 ORTHO05D026989 6.6e-06 55.8 61 49.2


User provided reference genes

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