Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 8.5e-168 593.6 296 100.0
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.2e-121 440.3 291 74.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.0e-121 439.5 285 74.0
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 3.3e-111 405.6 291 68.0
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.3e-111 405.6 289 68.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.6e-110 403.3 279 70.6
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.8e-110 402.5 280 70.4
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 6.2e-110 401.4 285 69.5
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 5.2e-109 398.3 279 68.8
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.6e-108 396.0 290 66.9
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.6e-108 396.0 280 67.9
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.6e-108 396.0 281 69.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 9.8e-108 394.0 280 66.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.2e-107 392.9 267 69.7
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 3.7e-107 392.1 289 67.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.9e-107 391.7 284 68.3
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 6.4e-107 391.3 282 68.1
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.9e-106 389.8 284 68.0
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.1e-106 388.7 284 68.0
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 7.1e-106 387.9 288 66.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.2e-105 387.1 286 67.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.5e-105 385.6 285 64.9
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.0e-104 384.0 273 68.5
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.0e-104 384.0 275 69.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.3e-104 383.6 300 64.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.3e-104 383.6 283 64.7
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.3e-104 382.9 282 66.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 5.1e-104 381.7 283 66.8
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 6.6e-104 381.3 283 64.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.9e-103 379.8 281 67.6
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 4.3e-103 378.6 274 65.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 5.6e-103 378.3 275 68.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 5.6e-103 378.3 289 64.4
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.3e-103 377.9 286 65.4
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 7.3e-103 377.9 285 63.2
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 7.3e-103 377.9 284 62.3
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 7.3e-103 377.9 288 62.8
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 9.5e-103 377.5 277 66.4
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 9.5e-103 377.5 283 63.6
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.2e-102 377.1 265 68.3
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.2e-102 377.1 282 67.4
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.6e-102 376.7 285 63.9
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-102 376.7 269 63.6
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 2.8e-102 375.9 291 64.9
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.7e-102 375.2 263 68.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.2e-102 374.8 283 62.9
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.1e-101 374.0 268 67.2
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.1e-101 374.0 287 63.4
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.3e-101 372.9 282 61.3
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.3e-101 372.9 279 65.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.1e-101 372.5 286 66.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 4.0e-101 372.1 283 62.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.2e-100 370.5 269 65.1
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.2e-100 370.5 283 64.3
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.5e-100 370.2 263 68.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.5e-100 370.2 280 62.5
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.6e-100 369.4 276 63.8
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.6e-100 369.4 284 61.6
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 4.4e-100 368.6 287 62.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 4.4e-100 368.6 282 62.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.7e-99 366.7 276 62.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.7e-99 366.7 275 63.6
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.8e-99 365.5 287 64.1
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 5.4e-98 361.7 271 64.9
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 7.1e-98 361.3 272 64.0
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 9.2e-98 360.9 298 57.4
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 2.1e-97 359.8 274 65.0
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.1e-97 359.8 272 65.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 6.0e-97 358.2 260 65.8
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 6.0e-97 358.2 268 65.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 7.8e-97 357.8 265 66.0
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.0e-96 357.5 278 62.6
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 3.0e-96 355.9 238 70.6
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 6.6e-96 354.8 254 66.1
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.9e-95 353.2 280 60.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.3e-95 352.1 233 71.2
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 5.6e-95 351.7 286 60.8
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 9.6e-95 350.9 228 71.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.1e-93 347.4 250 64.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.4e-93 346.3 282 62.1
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.2e-92 344.0 282 58.5
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.0e-92 343.2 298 57.7
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.3e-91 340.5 276 59.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 3.8e-91 339.0 276 62.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.4e-91 338.2 257 64.2
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.1e-90 337.4 256 62.5
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.1e-89 333.2 268 61.2
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.6e-86 322.4 246 65.9
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.4e-85 319.7 269 59.5
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 6.9e-85 318.2 271 58.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 9.0e-85 317.8 262 56.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.4e-82 309.7 250 56.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.9e-75 286.2 266 49.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-70 270.4 278 51.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-70 270.4 278 51.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.8e-70 268.9 278 51.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 6.2e-70 268.5 279 52.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 6.2e-70 268.5 278 51.8
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 5.3e-69 265.4 280 50.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.5e-68 263.8 285 50.2
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.0e-68 263.5 282 51.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.0e-68 263.5 257 48.2
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-68 263.1 276 50.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-68 262.7 270 50.7
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 4.5e-68 262.3 286 50.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.0e-67 261.2 282 49.6
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.3e-67 260.8 281 49.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 6.5e-67 258.5 263 49.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.9e-66 256.9 277 50.5
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 9.3e-66 254.6 232 58.2
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-65 253.8 282 48.2
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 3.5e-65 252.7 277 48.0
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.8e-64 250.4 285 48.1
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 5.7e-63 245.4 281 48.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.2e-58 229.6 298 39.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.2e-50 203.0 236 44.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.9e-49 198.4 200 51.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-48 198.0 248 44.8
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 3.3e-47 193.0 259 39.8
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.1e-45 186.0 228 44.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 7.7e-44 181.8 274 39.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-42 177.9 272 43.0
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 3.9e-40 169.5 182 47.8
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-39 166.0 186 48.9
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 9.7e-39 164.9 210 45.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-38 164.5 243 42.0
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-37 161.4 197 44.7
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-37 161.4 248 41.1
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 3.1e-37 159.8 225 44.4
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 210 45.2
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 5.3e-37 159.1 197 45.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-36 157.9 197 43.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-36 157.9 285 40.0
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 3.2e-34 149.8 145 51.7
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-31 140.2 153 48.4
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 3.3e-31 139.8 145 51.0
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.4e-31 139.4 146 47.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.7e-28 130.2 91 68.1
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 8.0e-25 118.6 210 39.0
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 8.0e-25 118.6 210 39.0
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.6e-20 104.4 171 35.7
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 5.9e-20 102.4 176 34.1
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 7.7e-20 102.1 144 46.5
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 7.7e-20 102.1 95 54.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 8.0e-17 92.0 69 62.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.1e-13 80.1 92 45.7
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-13 79.3 69 53.6
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 5.4e-13 79.3 69 53.6
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 8.3e-06 55.5 153 24.8


User provided reference genes

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