Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.1e-50 203.0 97 100.0
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 2.3e-45 185.3 97 86.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 1.1e-44 183.0 97 86.6
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.1e-44 183.0 97 86.6
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 85.6
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 1.9e-44 182.2 96 86.5
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 1.9e-44 182.2 96 86.5
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 4.3e-44 181.0 97 83.5
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 2.1e-43 178.7 97 83.5
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 6.2e-43 177.2 96 85.4
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 8.1e-43 176.8 97 83.5
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 8.1e-43 176.8 97 83.5
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 8.1e-43 176.8 97 81.4
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 1.1e-42 176.4 97 84.5
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.1e-42 176.4 97 82.5
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 1.1e-42 176.4 97 84.5
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 86.2
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 1.1e-42 176.4 97 81.4
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.4e-42 176.0 97 84.5
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 2.4e-42 175.3 94 84.0
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 2.4e-42 175.3 97 81.4
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 4.0e-42 174.5 95 82.1
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 5.2e-42 174.1 94 84.0
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 5.2e-42 174.1 95 81.1
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 5.2e-42 174.1 95 81.1
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 5.2e-42 174.1 97 80.4
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 6.9e-42 173.7 95 84.2
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 80.4
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 6.9e-42 173.7 95 82.1
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 82.3
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 9.0e-42 173.3 96 81.2
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 9.0e-42 173.3 97 80.4
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 1.2e-41 172.9 97 79.4
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 1.2e-41 172.9 96 80.2
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 1.5e-41 172.6 96 80.2
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 1.5e-41 172.6 96 80.2
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 1.5e-41 172.6 95 81.1
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 1.5e-41 172.6 95 80.0
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 1.5e-41 172.6 93 83.9
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 2.0e-41 172.2 95 81.1
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 2.0e-41 172.2 96 80.2
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 2.6e-41 171.8 97 79.4
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 2.6e-41 171.8 94 81.9
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 2.6e-41 171.8 97 79.4
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 3.4e-41 171.4 96 80.2
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 80.4
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 4.4e-41 171.0 97 80.4
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 5.8e-41 170.6 97 78.4
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 5.8e-41 170.6 97 78.4
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 5.8e-41 170.6 97 78.4
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 5.8e-41 170.6 94 79.8
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 79.4
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 79.4
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 79.4
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 79.4
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 79.4
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 7.6e-41 170.2 97 78.4
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 9.9e-41 169.9 97 77.3
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 1.3e-40 169.5 97 79.4
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 79.2
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.7e-40 169.1 97 78.4
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 1.7e-40 169.1 96 78.1
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 2.2e-40 168.7 97 78.4
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 2.2e-40 168.7 97 77.3
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.2e-40 168.7 97 79.4
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 2.9e-40 168.3 96 78.1
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 2.9e-40 168.3 96 79.2
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 3.8e-40 167.9 93 81.7
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 3.8e-40 167.9 97 77.3
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 3.8e-40 167.9 97 79.4
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 4.9e-40 167.5 96 79.2
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 4.9e-40 167.5 98 77.6
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 6.4e-40 167.2 96 77.1
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 1.1e-39 166.4 96 78.1
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 1.4e-39 166.0 94 79.8
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 3.2e-39 164.9 97 77.3
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 3.2e-39 164.9 97 77.3
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 5.4e-39 164.1 97 77.3
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 5.4e-39 164.1 97 76.3
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 7.1e-39 163.7 97 76.3
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 7.1e-39 163.7 97 76.3
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 7.1e-39 163.7 97 76.3
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 9.3e-39 163.3 97 75.3
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.2e-38 162.9 97 75.3
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 1.2e-38 162.9 94 76.6
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 1.2e-38 162.9 97 77.3
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 4.6e-38 161.0 96 74.0
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 1.3e-37 159.5 95 75.8
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 3.0e-37 158.3 115 67.8
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 3.9e-37 157.9 96 70.8
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 1.1e-36 156.4 97 73.2
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 1.1e-36 156.4 91 76.9
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.9e-36 155.6 112 67.0
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 3.3e-36 154.8 130 59.2
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 3.3e-36 154.8 97 74.2
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 3.3e-36 154.8 94 76.6
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 8.1e-35 150.2 97 75.3
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 1.8e-34 149.1 94 72.3
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 1.8e-34 149.1 94 72.3
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 9.0e-34 146.7 120 60.0
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 9.0e-34 146.7 120 60.0
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 9.0e-34 146.7 120 60.0
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.2e-33 146.4 140 54.3
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.2e-33 146.4 140 54.3
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 2.6e-33 145.2 84 77.4
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 5.4e-31 137.5 97 69.1
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 1.2e-30 136.3 73 83.6
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.2e-22 109.8 95 50.5
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 6.7e-21 104.0 95 48.4
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 4.5e-17 91.3 50 76.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 4.5e-17 91.3 50 76.0
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 4.5e-17 91.3 50 76.0
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 2.2e-16 89.0 97 51.5
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 4.9e-16 87.8 54 74.1
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 3.2e-15 85.1 59 64.4
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 4.6e-14 81.3 49 71.4
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 2.4e-10 68.9 38 78.9
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.6e-09 65.5 41 73.2


User provided reference genes

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