Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.3e-139 500.0 303 100.0
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.2e-106 389.0 304 75.3
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.6e-105 386.7 316 69.9
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.5e-100 369.0 304 73.4
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 8.6e-99 364.4 304 66.4
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.1e-97 359.8 272 70.6
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.4e-95 352.4 303 73.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 4.4e-95 352.1 307 73.6
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.3e-94 350.5 315 68.9
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.8e-94 349.4 301 74.8
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.8e-93 346.7 303 71.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.4e-93 346.3 303 71.3
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 9.2e-93 344.4 302 70.5
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.6e-92 343.6 306 64.7
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.5e-92 342.0 270 77.8
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 7.8e-92 341.3 288 73.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 7.8e-92 341.3 306 68.6
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.0e-91 340.9 306 69.0
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.7e-91 340.1 303 72.6
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 6.6e-91 338.2 306 68.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 8.6e-91 337.8 278 78.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.1e-90 337.4 307 72.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.5e-90 336.3 302 69.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 4.3e-90 335.5 302 64.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.3e-90 335.5 303 65.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 9.5e-90 334.3 302 70.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.2e-89 334.0 301 69.4
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.7e-89 332.0 312 70.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 6.1e-89 331.6 305 62.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 4.0e-88 328.9 268 66.8
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 5.2e-88 328.6 306 67.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 6.8e-88 328.2 306 69.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 4.4e-87 325.5 303 71.0
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.7e-87 325.1 302 70.5
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.8e-87 324.3 304 68.4
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.3e-86 323.9 300 70.7
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.3e-86 323.9 304 66.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 3.7e-86 322.4 340 65.9
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.7e-86 322.4 301 60.8
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.9e-86 322.0 303 60.4
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.4e-86 321.6 307 67.4
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 8.3e-86 321.2 301 64.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.8e-85 320.1 305 70.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 5.4e-85 318.5 306 63.4
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 7.0e-85 318.2 302 68.2
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 9.2e-85 317.8 302 65.2
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 9.2e-85 317.8 302 62.3
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 2.0e-84 316.6 310 61.3
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 3.5e-84 315.8 307 59.9
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 1.0e-83 314.3 308 60.4
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 5.0e-83 312.0 306 67.0
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 7.3e-82 308.1 306 62.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 2.8e-81 306.2 307 65.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.2e-81 305.1 307 65.1
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.1e-80 304.3 303 70.0
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.3e-80 303.1 301 65.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.0e-79 300.1 303 64.4
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 3.4e-79 299.3 306 57.2
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 4.4e-79 298.9 304 66.4
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.8e-79 298.5 308 60.1
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.2e-78 296.6 295 68.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.1e-77 294.3 286 64.7
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.4e-77 293.1 249 73.5
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 4.1e-77 292.4 307 63.2
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 7.0e-77 291.6 197 78.7
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.6e-76 290.4 172 84.9
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 2.7e-76 289.7 283 61.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 1.7e-75 287.0 331 58.3
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 6.6e-75 285.0 286 64.0
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 8.6e-75 284.6 342 64.0
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.5e-74 283.1 281 71.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 4.0e-72 275.8 288 61.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-71 273.5 305 65.6
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.5e-71 271.6 270 69.3
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 6.0e-68 261.9 295 66.1
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 7.8e-68 261.5 346 53.5
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.0e-67 261.2 300 63.0
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.0e-67 261.2 300 62.7
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.5e-66 257.3 301 61.8
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.5e-66 256.5 303 51.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.5e-66 256.5 303 51.8
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.2e-65 254.2 302 53.3
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 2.1e-65 253.4 309 57.0
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.7e-62 243.8 300 62.7
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.9e-62 243.0 303 52.5
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.9e-62 243.0 303 52.5
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.9e-62 243.0 303 52.5
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 8.4e-62 241.5 303 57.4
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.9e-61 240.4 305 59.7
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.9e-61 240.4 305 59.7
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.6e-60 237.3 306 54.2
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.1e-60 236.9 303 54.8
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 3.5e-60 236.1 292 56.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.6e-60 235.7 307 55.4
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.8e-60 235.0 303 57.1
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 2.3e-59 233.4 281 63.0
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.0e-59 233.0 191 63.9
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.1e-56 224.6 363 50.4
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.2e-56 222.2 333 46.2
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 9.0e-56 221.5 312 51.6
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.5e-55 220.7 314 51.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 8.4e-54 214.9 303 49.2
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.9e-53 213.8 193 60.6
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 3.0e-51 206.5 301 51.5
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 6.6e-51 205.3 301 55.5
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 8.7e-51 204.9 275 56.7
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.9e-50 203.8 288 58.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.3e-49 201.1 308 45.5
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.6e-49 200.7 196 57.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 9.0e-48 194.9 133 69.9
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.0e-47 193.7 191 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 2.5e-42 176.8 137 65.7
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.8e-40 170.6 143 60.8
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.4e-37 161.0 224 48.2
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.9e-36 155.2 171 51.5
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 7.9e-36 155.2 162 80.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.9e-34 150.6 160 55.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.5e-30 135.6 106 66.0
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 7.4e-26 122.1 147 50.3
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.1e-24 118.2 66 87.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 7.2e-21 105.5 98 60.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.7e-20 103.6 128 56.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.0e-19 101.7 95 60.0
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.0e-19 101.7 95 60.0
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.3e-19 100.5 130 63.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.0e-15 87.4 68 67.6
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.2e-14 84.0 48 81.2
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-13 81.3 64 65.6
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 1.2e-12 78.2 52 75.0
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.8e-08 64.3 51 60.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 3.1e-08 63.5 99 41.4
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.1e-08 62.0 124 36.3
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.1e-08 62.0 105 39.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 9.1e-08 62.0 89 43.8
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.4e-07 60.1 114 36.8
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 4.5e-07 59.7 105 38.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.9e-07 59.3 29 89.7
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.3e-06 58.2 107 36.4
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.7e-06 57.8 68 38.2
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 2.2e-06 57.4 108 35.2
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.2e-06 57.4 107 40.2
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 3.8e-06 56.6 68 36.8
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 3.8e-06 56.6 68 36.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 5.0e-06 56.2 115 35.7
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 6.5e-06 55.8 54 50.0
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 8.5e-06 55.5 106 34.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 8.5e-06 55.5 68 38.2
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 8.5e-06 55.5 66 40.9


User provided reference genes

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