Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.2e-284 981.1 495 100.0
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.8e-194 682.9 495 69.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.7e-187 659.1 453 71.1
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.0e-186 657.1 470 69.1
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.4e-186 656.8 526 64.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.5e-185 653.3 489 66.7
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.7e-184 649.8 477 67.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.8e-184 648.3 477 68.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.4e-183 646.0 496 66.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 3.1e-183 645.6 478 68.6
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 9.1e-183 644.0 465 69.0
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.6e-182 643.3 474 67.7
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.6e-182 643.3 492 65.9
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 5.9e-182 641.3 480 66.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.5e-180 636.7 495 65.1
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.9e-180 636.3 516 64.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.9e-180 636.3 491 64.2
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 4.2e-180 635.2 488 65.8
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 4.2e-180 635.2 492 65.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 5.5e-180 634.8 470 66.6
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 5.5e-180 634.8 453 69.5
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 7.2e-180 634.4 491 64.4
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 9.5e-180 634.0 490 66.3
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.2e-179 633.6 499 63.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.2e-179 633.6 468 66.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.6e-179 633.3 496 64.9
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.1e-179 632.9 473 66.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.6e-179 632.1 476 66.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 3.6e-179 632.1 473 66.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 6.1e-179 631.3 492 66.7
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 6.1e-179 631.3 480 66.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 8.0e-179 630.9 466 67.6
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-178 630.6 471 67.1
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-178 630.2 491 64.6
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.0e-178 629.0 471 67.1
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.2e-177 627.1 465 67.5
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 9.8e-177 624.0 485 63.7
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 9.8e-177 624.0 500 63.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.7e-176 623.2 490 64.7
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.8e-176 622.5 492 64.0
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.3e-176 621.3 516 61.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 9.2e-175 617.5 494 63.2
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.2e-174 617.1 514 61.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.2e-174 617.1 482 63.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.2e-174 617.1 467 65.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.6e-174 616.7 477 64.4
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.6e-174 616.7 460 66.3
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.7e-174 615.9 489 63.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 3.5e-174 615.5 506 61.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 4.5e-174 615.1 506 62.6
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 5.9e-174 614.8 460 66.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.9e-174 614.8 460 66.1
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.9e-174 614.8 467 66.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.0e-173 614.0 477 65.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.0e-173 614.0 476 66.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.3e-173 613.6 460 66.3
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.3e-173 612.8 491 64.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.8e-173 612.1 452 66.4
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.0e-173 611.7 460 65.9
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 5.0e-173 611.7 501 61.5
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.0e-173 611.7 483 64.0
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 6.6e-173 611.3 525 60.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 1.1e-172 610.5 490 63.7
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.5e-172 610.1 463 62.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.6e-171 606.7 499 61.3
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 4.7e-171 605.1 453 64.5
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 8.0e-171 604.4 493 63.3
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 8.0e-171 604.4 492 62.4
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.8e-170 603.2 452 65.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 6.8e-170 601.3 467 63.8
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.0e-169 599.7 444 67.1
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 9.8e-169 597.4 453 63.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.3e-168 597.0 474 62.2
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 8.3e-168 594.3 477 62.1
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-167 593.6 465 64.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 3.2e-167 592.4 470 62.1
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 4.1e-167 592.0 453 63.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.6e-166 590.1 477 61.8
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.6e-166 590.1 477 61.8
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.0e-166 589.7 474 61.6
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.0e-166 589.7 474 61.6
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.8e-166 587.8 474 61.2
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.0e-165 587.4 521 58.7
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.9e-165 585.5 404 70.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 8.6e-165 584.3 404 70.3
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.7e-163 578.6 477 62.9
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.4e-162 577.0 472 60.8
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-159 567.4 425 66.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.4e-159 567.0 405 67.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 3.3e-156 555.8 534 55.8
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 5.2e-154 548.5 477 57.9
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.0e-153 546.6 474 59.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.4e-146 523.1 452 58.6
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 8.9e-146 521.2 472 58.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.7e-144 516.9 556 50.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-143 511.9 495 55.8
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.6e-139 500.4 371 64.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.4e-138 496.5 392 63.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.1e-138 496.1 464 57.3
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 5.2e-138 495.4 493 53.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 4.8e-131 472.2 490 54.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 5.4e-127 458.8 443 52.6
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.0e-125 453.0 333 66.7
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.4e-122 444.1 443 51.5
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 9.7e-100 368.2 251 70.9
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.2e-99 365.2 231 75.8
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.9e-89 332.4 239 66.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 5.9e-89 332.4 239 66.1
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.9e-87 327.4 200 76.0
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 4.2e-87 326.2 201 75.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 5.5e-87 325.9 290 59.7
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 5.7e-84 315.8 256 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 7.4e-84 315.5 322 50.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.1e-82 309.7 318 49.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 3.3e-76 290.0 331 45.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.7e-76 289.3 239 60.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 4.1e-74 283.1 188 70.7
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.8e-69 265.4 251 54.2
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 8.8e-69 265.4 224 58.5
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-66 258.1 213 60.1
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.4e-66 256.1 212 60.4
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 7.0e-66 255.8 179 69.3
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-62 244.6 225 55.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.8e-62 243.8 178 66.3
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.6e-52 210.7 157 63.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 2.6e-52 210.7 170 60.0
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.1e-50 203.4 164 57.9
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 7.8e-41 172.6 420 26.7
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.4e-35 152.9 156 52.6
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.0e-32 145.6 226 41.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.0e-32 145.6 490 28.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.6e-32 142.5 163 46.6
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.9e-26 124.8 143 49.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.4e-26 123.2 146 46.6
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-19 102.1 282 32.3
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.8e-19 100.5 55 89.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-18 99.0 100 46.0
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-16 91.7 63 68.3
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.8e-13 81.6 153 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.3e-11 75.5 57 63.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.9e-11 73.6 69 63.8
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.4e-11 73.2 81 45.7
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.3e-08 65.5 74 47.3
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.8e-06 57.8 92 39.1


User provided reference genes

Program Settings