Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.2e-73 278.9 205 100.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 7.0e-28 128.3 161 63.4
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.0e-26 122.1 169 65.1
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.1e-24 115.2 161 55.9
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.2e-21 106.7 158 64.6
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.8e-21 106.3 92 68.5
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.8e-21 105.5 91 69.2
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.3e-21 105.1 161 64.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.8e-20 103.6 159 60.4
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.1e-20 102.8 134 57.5
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 5.4e-20 102.1 162 63.6
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-19 100.5 161 63.4
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 5.9e-19 98.6 158 69.6
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 1.0e-18 97.8 129 72.1
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 2.3e-18 96.7 85 71.8
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.5e-17 94.0 157 54.1
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 5.5e-17 92.0 166 62.7
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 7.2e-17 91.7 132 59.1
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 7.2e-17 91.7 87 65.5
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 7.2e-17 91.7 92 75.0
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.2e-17 91.7 125 69.6
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 9.5e-17 91.3 88 63.6
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.2e-16 90.9 155 49.7
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.6e-16 89.4 81 70.4
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.6e-16 89.4 81 70.4
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.0e-15 87.8 131 54.2
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.0e-15 87.8 87 60.9
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.8e-15 87.0 95 73.7
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.0e-15 85.9 97 70.1
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 6.8e-15 85.1 147 44.2
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.5e-14 84.0 77 81.8
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.6e-14 83.2 111 71.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.6e-14 83.2 88 69.3
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 7.5e-14 81.6 62 72.6
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.5e-14 81.6 87 72.4
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 9.8e-14 81.3 85 57.6
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 2.8e-13 79.7 141 62.4
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 4.9e-13 79.0 92 67.4
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 6.3e-13 78.6 86 72.1
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 8.3e-13 78.2 92 54.3
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.4e-12 77.4 131 60.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.4e-12 77.4 114 65.8
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.8e-12 77.0 153 64.1
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.8e-12 77.0 84 72.6
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 4.1e-12 75.9 157 59.2
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.4e-12 75.5 85 52.9
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 7.0e-12 75.1 159 54.7
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.2e-12 74.7 72 63.9
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.2e-11 74.3 62 71.0
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 1.2e-11 74.3 159 47.2
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.5e-11 72.8 77 76.6
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.9e-11 72.0 85 51.8
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 7.8e-11 71.6 70 61.4
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 7.8e-11 71.6 97 49.5
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 7.8e-11 71.6 97 49.5
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 7.8e-11 71.6 133 64.7
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.3e-10 70.9 56 75.0
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.3e-10 70.9 84 66.7
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.3e-10 70.9 129 58.1
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.3e-10 70.9 156 57.1
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.3e-10 70.1 130 58.5
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 5.0e-10 68.9 81 51.9
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 5.0e-10 68.9 77 68.8
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 5.0e-10 68.9 80 52.5
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 5.0e-10 68.9 79 62.0
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 6.6e-10 68.6 72 54.2
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.6e-10 68.6 77 53.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 6.6e-10 68.6 69 62.3
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 8.6e-10 68.2 155 57.4
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 8.6e-10 68.2 63 63.5
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 8.6e-10 68.2 75 57.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.6e-10 68.2 85 52.9
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.1e-09 67.8 126 46.8
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.1e-09 67.8 121 43.0
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.1e-09 67.8 130 39.2
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.5e-09 67.4 78 53.8
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.5e-09 67.4 73 72.6
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.5e-09 67.4 76 55.3
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.5e-09 66.6 75 76.0
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.5e-09 66.6 46 82.6
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.5e-09 66.6 76 51.3
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.3e-09 66.2 74 73.0
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 4.3e-09 65.9 72 55.6
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 4.3e-09 65.9 73 61.6
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 4.3e-09 65.9 121 68.6
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 4.3e-09 65.9 75 57.3
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.6e-09 65.5 161 47.8
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 7.3e-09 65.1 177 50.8
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 7.3e-09 65.1 81 50.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 7.3e-09 65.1 70 77.1
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 9.5e-09 64.7 154 55.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 9.5e-09 64.7 119 50.4
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.2e-08 64.3 74 54.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.2e-08 64.3 161 43.5
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-08 63.9 107 56.1
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.1e-08 63.5 84 66.7
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.1e-08 63.5 80 67.5
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.8e-08 63.2 76 71.1
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 2.8e-08 63.2 72 63.9
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 3.6e-08 62.8 78 62.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 3.6e-08 62.8 90 57.8
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.6e-08 62.8 44 79.5
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.6e-08 62.8 161 49.7
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 4.7e-08 62.4 74 71.6
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 4.7e-08 62.4 80 51.2
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 6.1e-08 62.0 55 70.9
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 6.1e-08 62.0 161 50.3
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 8.0e-08 61.6 64 64.1
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.0e-08 61.6 74 51.4
SHI11423 Sapria himalayana HOM05D003347 ORTHO05D003821 1.0e-07 61.2 71 71.8
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.4e-07 60.8 161 42.2
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.8e-07 60.5 44 75.0
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.8e-07 60.5 41 78.0
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.8e-07 60.5 72 54.2
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.3e-07 60.1 131 52.7
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 3.0e-07 59.7 70 72.9
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 3.0e-07 59.7 74 51.4
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.0e-07 59.7 48 68.8
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 4.0e-07 59.3 161 56.5
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.0e-07 59.3 159 51.6
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.0e-07 59.3 155 45.2
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.2e-07 58.9 131 57.3
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 6.8e-07 58.5 74 68.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 6.8e-07 58.5 67 61.2
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.2e-06 57.8 44 70.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.2e-06 57.8 46 71.7
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.5e-06 57.4 73 46.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.6e-06 56.6 72 65.3
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 3.4e-06 56.2 69 46.4
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.4e-06 55.8 71 69.0
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 4.4e-06 55.8 81 55.6
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 5.7e-06 55.5 71 69.0
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 5.7e-06 55.5 67 53.7
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 5.7e-06 55.5 46 63.0
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.5e-06 55.1 45 66.7


User provided reference genes

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