Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.9e-285 984.2 524 100.0
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.3e-239 831.6 441 100.0
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.5e-74 284.6 581 37.5
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 3.6e-68 263.5 560 37.7
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 9.7e-66 255.4 594 36.2
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 5.5e-53 213.0 552 34.1
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.2e-47 195.3 618 32.2
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 4.0e-43 180.3 611 30.9
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 8.8e-43 179.1 538 32.7
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.6e-42 177.6 845 26.3
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 4.4e-42 176.8 546 32.4
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 8.2e-41 172.6 527 32.4
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.8e-40 171.4 542 34.5
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.8e-40 171.4 517 31.7
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 9.1e-40 169.1 527 31.7
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 2.7e-39 167.5 538 32.3
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 5.0e-38 163.3 604 30.3
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 6.5e-38 162.9 568 30.8
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 1.5e-37 161.8 540 30.6
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.7e-36 157.5 361 38.2
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.7e-36 156.8 619 29.9
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 1.4e-35 155.2 585 28.7
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.0e-34 151.4 577 31.5
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 1.1e-32 145.6 651 27.6
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 1.4e-32 145.2 605 31.6
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.8e-32 144.8 540 30.0
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.0e-31 141.4 519 29.9
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.7e-30 138.3 519 28.3
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 5.0e-30 136.7 661 25.6
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 3.3e-29 134.0 630 27.0
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 7.2e-29 132.9 586 29.7
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 1.2e-28 132.1 626 28.3
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 2.1e-28 131.3 580 29.3
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.3e-27 127.9 530 29.4
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.2e-26 125.6 660 26.1
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 1.5e-26 125.2 469 28.4
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 6.3e-25 119.8 811 23.6
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 4.1e-24 117.1 574 29.4
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 9.2e-24 115.9 394 31.2
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 2.7e-23 114.4 553 26.0
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 3.5e-23 114.0 623 25.5
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 4.5e-23 113.6 630 26.7
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 7.8e-23 112.8 514 27.4
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.0e-22 112.5 630 26.5
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.7e-22 111.7 539 27.1
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.9e-21 108.2 580 26.7
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 5.6e-21 106.7 515 27.2
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 1.6e-20 105.1 629 25.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.1e-20 104.8 677 25.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.8e-19 101.7 286 33.2
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.3e-19 101.3 149 43.6
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 3.0e-19 100.9 518 27.6
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 4.0e-19 100.5 382 30.4
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.5e-18 98.6 598 26.1
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 4.4e-18 97.1 518 24.9
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 7.5e-18 96.3 578 26.6
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 9.8e-18 95.9 531 26.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 9.8e-18 95.9 631 25.0
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 9.8e-18 95.9 385 27.0
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.7e-17 95.1 507 24.5
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.7e-17 95.1 515 25.8
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 4.9e-17 93.6 558 25.4
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 8.3e-17 92.8 499 24.2
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 1.1e-16 92.4 77 59.7
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 1.4e-16 92.0 639 25.5
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.2e-16 90.9 72 65.3
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.1e-16 90.5 312 32.7
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 5.4e-16 90.1 98 53.1
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 7.0e-16 89.7 506 23.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 9.2e-16 89.4 506 23.5
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 9.2e-16 89.4 174 39.1
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 2.7e-15 87.8 305 32.1
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 3.5e-15 87.4 518 25.1
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 6.0e-15 86.7 499 24.0
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 7.8e-15 86.3 708 23.9
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 7.8e-15 86.3 68 63.2
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.7e-14 85.1 499 23.2
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 2.3e-14 84.7 476 27.3
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.0e-14 84.3 160 37.5
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.9e-13 81.6 506 20.8
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.9e-13 81.6 502 24.1
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 1.9e-13 81.6 362 28.7
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 3.3e-13 80.9 131 35.9
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 5.6e-13 80.1 113 41.6
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 7.3e-13 79.7 313 30.4
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 9.5e-13 79.3 365 27.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.1e-12 78.2 75 53.3
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 4.7e-12 77.0 74 51.4
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.1e-11 74.3 82 45.1
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 5.2e-11 73.6 73 47.9
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.2e-10 72.4 95 41.1
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.6e-10 71.2 93 41.9
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.4e-10 70.9 73 46.6
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 3.4e-10 70.9 146 31.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 4.4e-10 70.5 166 30.1
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 1.3e-09 68.9 66 53.0
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 2.2e-09 68.2 175 31.4
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.2e-09 68.2 71 45.1
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 2.9e-09 67.8 95 41.1
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 3.7e-09 67.4 617 24.5
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 4.9e-09 67.0 95 41.1
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 4.9e-09 67.0 95 41.1
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 4.9e-09 67.0 95 41.1
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 6.4e-09 66.6 491 22.6
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.1e-08 65.9 609 25.3
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.4e-08 65.5 221 29.9
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 2.4e-08 64.7 83 42.2
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 3.2e-08 64.3 102 41.2
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.2e-08 64.3 71 43.7
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 3.2e-08 64.3 545 24.8
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 5.4e-08 63.5 99 36.4
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 5.4e-08 63.5 220 28.6
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 7.0e-08 63.2 192 34.4
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.0e-08 63.2 71 43.7
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 1.2e-07 62.4 49 63.3
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 3.5e-07 60.8 245 28.6
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 4.6e-07 60.5 493 21.7


User provided reference genes

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