Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0001560 Simmondsia chinensis HOM05D007619 ORTHO05D009522 1.9e-178 629.0 317 100.0
EL10Ac4g09950 Beta vulgaris HOM05D007619 ORTHO05D009522 5.8e-82 308.5 309 56.0
Hund27507 Selenicereus undatus HOM05D007619 ORTHO05D009522 4.2e-80 302.4 333 54.4
Ciclev10012185m.g Citrus clementina HOM05D007619 ORTHO05D009522 9.6e-77 291.2 314 54.1
AUR62000347 Chenopodium quinoa HOM05D000031 ORTHO05D009522 6.2e-76 288.5 322 52.2
GSVIVG01019143001 Vitis vinifera HOM05D007619 ORTHO05D009522 1.1e-75 287.7 313 52.7
MD04G1241800 Malus domestica HOM05D007619 ORTHO05D009522 3.1e-75 286.2 326 53.7
Thecc.05G206200 Theobroma cacao HOM05D007619 ORTHO05D009522 3.1e-75 286.2 320 55.6
RcHm_v2.0_Chr3g0448201 Rosa chinensis HOM05D007619 ORTHO05D009522 6.9e-75 285.0 327 52.6
Cfa006282 Carpinus fangiana HOM05D007619 ORTHO05D009522 3.4e-74 282.7 314 54.1
Nn7g37654 Nelumbo nucifera HOM05D007619 ORTHO05D009522 3.4e-74 282.7 329 52.6
Glyma.10G170300 Glycine max HOM05D007619 ORTHO05D009522 5.8e-74 282.0 315 52.1
TAR633G2353 Trochodendron aralioides HOM05D007619 ORTHO05D009522 1.7e-73 280.4 315 54.3
Gorai.004G260400 Gossypium raimondii HOM05D007619 ORTHO05D009522 2.2e-73 280.0 316 51.9
Eucgr.C02023 Eucalyptus grandis HOM05D007619 ORTHO05D009522 4.9e-73 278.9 312 53.5
Gohir.1Z049672 Gossypium hirsutum HOM05D007619 ORTHO05D009522 6.5e-73 278.5 317 52.4
Gohir.D08G244101 Gossypium hirsutum HOM05D007619 ORTHO05D009522 6.5e-73 278.5 317 52.4
Psat4g220960 Pisum sativum HOM05D007619 ORTHO05D009522 8.4e-73 278.1 305 55.1
Ca_09970_v3 Cicer arietinum L. HOM05D007619 ORTHO05D009522 1.4e-72 277.3 315 53.3
Haze_04528 Corylus avellana HOM05D007619 ORTHO05D009522 1.4e-72 277.3 312 53.2
Manes.09G184300 Manihot esculenta HOM05D007619 ORTHO05D009522 9.3e-72 274.6 315 54.0
Ah.06g195590 Amaranthus hybridus HOM05D000031 ORTHO05D000030 6.0e-71 271.9 312 52.2
arahy.Tifrunner.gnm1.ann1.P2W93U Arachis hypogaea HOM05D007619 ORTHO05D009522 6.0e-71 271.9 317 53.6
Glyma.20G219700 Glycine max HOM05D007619 ORTHO05D009522 7.9e-71 271.6 324 52.2
Phvul.010G077712 Phaseolus vulgaris HOM05D007619 ORTHO05D009522 2.3e-70 270.0 315 52.4
TPR.G14653 Trifolium pratense HOM05D007619 ORTHO05D009522 8.7e-70 268.1 307 52.1
arahy.Tifrunner.gnm1.ann1.YK6SIT Arachis hypogaea HOM05D007619 ORTHO05D009522 1.5e-69 267.3 317 53.0
Lalb_Chr21g0311391 Lupinus albus HOM05D007619 ORTHO05D009522 4.3e-69 265.8 302 52.6
VMungo0720G2770 Vigna mungo HOM05D007619 ORTHO05D009522 4.3e-69 265.8 333 48.0
Atru.chr12.2107 Acer truncatum HOM05D007619 ORTHO05D009522 8.2e-68 261.5 306 52.3
Aqoxy2G03954 Aquilegia oxysepala HOM05D007619 ORTHO05D009522 8.2e-68 261.5 320 49.1
PSO017G6303 Papaver somniferum HOM05D007619 ORTHO05D009522 8.2e-68 261.5 317 48.6
Hund21888 Selenicereus undatus HOM05D007619 ORTHO05D009522 1.4e-67 260.8 269 56.5
vmacro10399 Vaccinium macrocarpon HOM05D007619 ORTHO05D009522 3.1e-67 259.6 328 50.0
MBI11_g04278_MAGBIO Magnolia biondii HOM05D007619 ORTHO05D009522 4.1e-67 259.2 323 48.3
ClCG11G010990 Citrullus lanatus HOM05D007619 ORTHO05D009522 6.9e-67 258.5 310 49.0
Lalb_Chr02g0149381 Lupinus albus HOM05D007619 ORTHO05D009522 1.5e-66 257.3 301 51.5
Medtr1g078380 Medicago truncatula HOM05D007619 ORTHO05D009522 1.5e-66 257.3 315 50.2
Hma1.2p1_0220F.1_g093010 Hydrangea macrophylla HOM05D007619 ORTHO05D009522 2.0e-66 256.9 296 53.4
FAN14G0392 Fragaria x ananassa HOM05D007619 ORTHO05D009522 3.8e-65 252.7 370 44.3
FAN09G3963 Fragaria x ananassa HOM05D007619 ORTHO05D009522 1.1e-64 251.1 392 43.4
Potri.013G087300 Populus trichocarpa HOM05D007619 ORTHO05D009522 9.3e-64 248.1 312 49.4
FAN05G3312 Fragaria x ananassa HOM05D007619 ORTHO05D009522 2.7e-63 246.5 403 41.7
Cc09_g03420 Coffea canephora HOM05D007619 ORTHO05D009522 4.6e-63 245.7 334 45.8
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 4.6e-63 245.7 300 51.7
TPR.G14659 Trifolium pratense HOM05D007619 ORTHO05D009522 1.0e-62 244.6 306 48.4
AUR62006691 Chenopodium quinoa HOM05D007619 ORTHO05D009522 1.3e-62 244.2 320 49.1
MELO3C008758.2 Cucumis melo HOM05D007619 ORTHO05D009522 1.5e-61 240.7 320 45.6
CsaV3_2G009500 Cucumis sativus L. HOM05D007619 ORTHO05D009522 4.3e-61 239.2 311 45.7
Solyc05g055830.3 Solanum lycopersicum HOM05D007619 ORTHO05D009522 2.2e-60 236.9 317 45.1
Sopen05g034230 Solanum pennellii HOM05D007619 ORTHO05D009522 2.8e-60 236.5 314 45.2
PGSC0003DMG400023471 Solanum tuberosum HOM05D007619 ORTHO05D009522 1.1e-59 234.6 314 45.5
CiPaw.08G116400 Carya illinoinensis HOM05D007619 ORTHO05D009522 1.8e-59 233.8 278 49.3
Peaxi162Scf00156g00417 Petunia axillaris HOM05D007619 ORTHO05D009522 2.4e-59 233.4 311 46.0
Lsat_1_v5_gn_2_17180 Lactuca sativa HOM05D007619 ORTHO05D009522 1.2e-58 231.1 301 44.5
Lj5g0000048 Lotus japonicus HOM05D007619 ORTHO05D009522 1.5e-58 230.7 267 51.7
Duzib128G0301 Durio zibethinus HOM05D007619 ORTHO05D009522 1.3e-57 227.6 287 49.1
HanXRQChr07g0190091 Helianthus annuus HOM05D007619 ORTHO05D009522 4.2e-56 222.6 301 45.8
CAN.G694.14 Capsicum annuum HOM05D007619 ORTHO05D009522 1.2e-55 221.1 309 44.7
CDE04G2379 Ceratophyllum demersum HOM05D007619 ORTHO05D009522 6.1e-55 218.8 313 45.0
ECA238G3388 Erigeron canadensis HOM05D000092 ORTHO05D000042 2.3e-54 216.9 295 44.7
Prupe.6G359200 Prunus persica HOM05D007619 ORTHO05D009522 2.3e-54 216.9 276 50.0
Gohir.A08G223800 Gossypium hirsutum HOM05D007619 ORTHO05D009522 3.0e-54 216.5 317 44.2
FAN02G4130 Fragaria x ananassa HOM05D007619 ORTHO05D009522 5.1e-54 215.7 336 44.9
MSTRG.27407 Avicennia marina HOM05D007619 ORTHO05D009522 3.3e-53 213.0 312 44.6
Sed0001247 Sechium edule HOM05D007619 ORTHO05D009522 2.8e-52 209.9 256 47.7
Zm00001eb394570 Zea mays HOM05D007619 ORTHO05D009522 1.1e-51 208.0 334 41.0
CDE07G1839 Ceratophyllum demersum HOM05D007619 ORTHO05D009522 2.4e-51 206.8 191 59.2
Migut.F01883 Erythranthe guttata HOM05D007619 ORTHO05D009522 1.5e-50 204.1 307 45.3
SGA_v2.0_scaffold340G49291 Striga asiatica HOM05D007619 ORTHO05D009522 1.5e-50 204.1 306 42.8
Zm00001eb017060 Zea mays HOM05D007619 ORTHO05D009522 1.5e-50 204.1 336 41.7
Actinidia34778 Actinidia chinensis HOM05D007619 ORTHO05D009522 1.0e-49 201.4 183 58.5
PSO675G7165 Papaver somniferum HOM05D007619 ORTHO05D009522 1.7e-49 200.7 268 43.7
HPP92_024640 Vanilla planifolia HOM05D001334 ORTHO05D001119 4.2e-48 196.1 292 43.5
Os01g0100600 Oryza sativa ssp. japonica HOM05D007619 ORTHO05D009522 1.2e-47 194.5 334 40.7
Nitab4.5_0009285g0010 Nicotiana tabacum HOM05D007619 ORTHO05D009522 1.3e-44 184.5 313 43.1
Rhsim09G0130800 Rhododendron simsii HOM05D003215 ORTHO05D003735 3.1e-43 179.9 385 36.6
Nitab4.5_0005183g0010 Nicotiana tabacum HOM05D007619 ORTHO05D009522 1.2e-42 177.9 308 42.5
Oeu010149.1 Olea europaea HOM05D007619 ORTHO05D009522 1.6e-42 177.6 283 43.5
Dinv29118 Davidia involucrata HOM05D007619 ORTHO05D009522 5.0e-41 172.6 265 43.8
Mapoly0093s0084 Marchantia polymorpha HOM05D007619 ORTHO05D009522 6.5e-41 172.2 302 40.4
Pp3c8_1020 Physcomitrium patens HOM05D007619 ORTHO05D009522 2.0e-37 160.6 206 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3969 Anthoceros agrestis HOM05D007619 ORTHO05D009522 1.9e-32 144.1 261 41.0
SalBow6G3661 Salvia bowleyana HOM05D007619 ORTHO05D009522 3.2e-32 143.3 307 38.4
SEGI_00786 Sequoiadendron giganteum HOM05D007619 ORTHO05D009522 1.8e-30 137.5 120 60.0
Sabra18G0055400 Salix brachista HOM05D007619 ORTHO05D009522 1.2e-29 134.8 93 69.9
QL01p050350 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-29 134.4 95 70.5
SHI13735 Sapria himalayana HOM05D007619 ORTHO05D009522 4.8e-28 129.4 305 37.4
MD12G1258700 Malus domestica HOM05D007619 ORTHO05D009522 2.4e-27 127.1 81 74.1
Oeu040489.1 Olea europaea HOM05D007619 ORTHO05D009522 7.7e-26 122.1 93 65.6
MD12G1258600 Malus domestica HOM05D007619 ORTHO05D009522 1.6e-23 114.4 193 43.0
SMO230G0088 Selaginella moellendorffii HOM05D007619 ORTHO05D009522 2.8e-23 113.6 191 42.9
Actinidia38907 Actinidia chinensis HOM05D003215 ORTHO05D003735 9.2e-19 98.6 127 48.8
Cpa.g.sc1371.1 Carica papaya HOM05D007619 ORTHO05D009522 3.3e-16 90.1 189 35.4
Cpa.g.c37388 Carica papaya HOM05D007619 ORTHO05D009522 9.5e-16 88.6 52 78.8
Sabra18G0055300 Salix brachista HOM05D007619 ORTHO05D009522 1.2e-13 81.6 178 36.0
ATR0609G094 Amborella trichopoda HOM05D007619 ORTHO05D009522 1.8e-11 74.3 184 35.9
SEGI_37386 Sequoiadendron giganteum HOM05D007619 ORTHO05D009522 2.7e-10 70.5 169 33.1
FvH4_6g00730 Fragaria vesca HOM05D007619 ORTHO05D009522 1.9e-08 64.3 40 80.0


User provided reference genes

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