Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 2.1e-241 838.6 402 100.0
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 3.8e-110 402.5 396 51.8
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.0e-62 245.0 393 38.4
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 3.6e-60 236.5 401 35.9
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 4.8e-57 226.1 409 36.9
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 1.7e-54 217.6 406 35.0
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 4.2e-53 213.0 417 36.7
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.6e-52 211.1 399 35.6
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 3.0e-51 206.8 400 35.0
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 4.0e-51 206.5 407 33.7
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.6e-50 203.8 403 33.5
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 5.7e-50 202.6 411 34.5
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 9.7e-50 201.8 417 33.8
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 6.3e-49 199.1 407 32.7
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 6.3e-49 199.1 405 32.1
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 8.2e-49 198.7 404 32.9
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 1.4e-48 198.0 352 35.8
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.8e-48 197.6 398 33.2
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 7.0e-48 195.7 402 35.1
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.9e-46 190.3 399 32.6
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.9e-45 187.6 399 32.1
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 9.4e-45 185.3 398 33.4
Sc09g0001480 Simmondsia chinensis HOM05D007822 ORTHO05D009360 3.6e-44 183.3 127 70.9
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 4.7e-44 183.0 395 32.7
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 8.0e-44 182.2 409 33.3
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 1.8e-43 181.0 399 31.1
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.0e-43 180.3 400 32.0
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.2e-43 179.5 370 33.2
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 8.8e-43 178.7 399 31.1
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 7.5e-42 175.6 362 32.3
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 2.2e-41 174.1 414 32.6
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 6.3e-41 172.6 396 33.3
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.3e-41 172.2 404 32.7
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-40 171.8 402 32.6
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 2.4e-40 170.6 410 32.7
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 2.4e-40 170.6 320 34.4
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 2.7e-39 167.2 363 32.8
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-38 165.2 392 31.4
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 6.5e-38 162.5 397 28.5
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.6e-36 157.9 370 33.2
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 2.1e-36 157.5 403 31.5
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 7.0e-32 142.5 397 32.0
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 2.3e-30 137.5 401 28.4
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.8e-30 136.7 327 30.6
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 1.2e-28 131.7 411 27.7
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.6e-28 130.2 235 34.9
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 6.8e-27 125.9 230 32.6
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 2.0e-26 124.4 211 34.6
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 7.5e-26 122.5 321 31.8
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 4.9e-25 119.8 339 30.1
Sc19g0005840 Simmondsia chinensis HOM05D022095 ORTHO05D009360 6.4e-25 119.4 200 35.5
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.2e-23 115.2 225 38.2
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 2.7e-23 114.0 234 32.1
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 3.6e-20 103.6 194 31.4
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 3.1e-19 100.5 128 43.0
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 4.0e-19 100.1 329 30.1
Sc01g0006640 Simmondsia chinensis HOM05D019591 ORTHO05D009360 2.0e-18 97.8 190 31.1
Sc16g0004890 Simmondsia chinensis HOM05D022095 ORTHO05D009360 2.6e-18 97.4 318 26.1
Sc08g0005890 Simmondsia chinensis HOM05D015336 ORTHO05D009360 9.8e-18 95.5 212 29.2
Sc01g0006370 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.3e-17 95.1 148 33.8
Medtr6g034615 Medicago truncatula HOM05D007822 ORTHO05D009360 1.7e-17 94.7 160 33.1
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 1.7e-17 94.7 185 33.5
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 6.4e-17 92.8 196 31.6
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 1.1e-16 92.0 130 43.8
Sc06g0004600 Simmondsia chinensis HOM05D022095 ORTHO05D009360 4.1e-16 90.1 145 35.2
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.6e-15 88.2 190 33.7
Sc10g0007890 Simmondsia chinensis HOM05D015336 ORTHO05D009360 2.0e-15 87.8 206 29.1
Sc08g0004680 Simmondsia chinensis HOM05D019591 ORTHO05D009360 4.6e-15 86.7 151 29.8
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 7.8e-15 85.9 208 30.3
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 1.7e-14 84.7 266 30.1
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 3.0e-14 84.0 139 35.3
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-13 82.0 260 30.4
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 1.5e-13 81.6 190 30.5
Sc20g0001770 Simmondsia chinensis HOM05D015336 ORTHO05D009360 4.3e-13 80.1 300 25.0
Sc14g0004640 Simmondsia chinensis HOM05D022095 ORTHO05D009360 5.6e-13 79.7 167 32.3
Sc19g0006880 Simmondsia chinensis HOM05D015336 ORTHO05D009360 1.6e-12 78.2 130 33.8
Sc19g0005870 Simmondsia chinensis HOM05D019591 ORTHO05D009360 3.6e-12 77.0 110 33.6
Sc10g0005610 Simmondsia chinensis HOM05D015336 ORTHO05D009360 4.4e-10 70.1 157 31.2
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 5.8e-10 69.7 140 31.4
Lalb_Chr23g0273131 Lupinus albus HOM05D007822 ORTHO05D009360 8.3e-09 65.9 96 35.4
Lalb_Chr23g0273141 Lupinus albus HOM05D007822 ORTHO05D009360 1.4e-08 65.1 96 35.4
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 2.4e-08 64.3 320 25.9
PSO135G0788 Papaver somniferum HOM05D001729 ORTHO05D001155 3.2e-08 63.9 238 28.6
Sc14g0002510 Simmondsia chinensis HOM05D015336 ORTHO05D009360 4.1e-08 63.5 160 28.8
Sc06g0004560 Simmondsia chinensis HOM05D019591 ORTHO05D009360 5.4e-08 63.2 125 31.2
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 1.6e-07 61.6 133 30.8
Nitab4.5_0000059g0620 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.1e-07 61.2 322 22.7
PSO384G0370 Papaver somniferum HOM05D001729 ORTHO05D001155 7.8e-07 59.3 147 34.0
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 1.3e-06 58.5 280 25.7
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 2.3e-06 57.8 134 35.1
Medtr0128s0070 Medicago truncatula HOM05D000007 ORTHO05D000017 3.0e-06 57.4 336 23.8
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 3.9e-06 57.0 270 25.9
QL08p054650 Quercus lobata HOM05D002420 ORTHO05D002422 3.9e-06 57.0 322 25.2
Peaxi162Scf00515g00043 Petunia axillaris HOM05D002420 ORTHO05D002422 6.6e-06 56.2 135 32.6
Sc11g0003520 Simmondsia chinensis HOM05D015336 ORTHO05D009360 6.6e-06 56.2 134 27.6
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 6.6e-06 56.2 131 36.6
AL1G47320 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.6e-06 55.8 364 24.5
Medtr0128s0020 Medicago truncatula HOM05D000007 ORTHO05D000017 8.6e-06 55.8 335 23.6
QL08p054647 Quercus lobata HOM05D002420 ORTHO05D002422 8.6e-06 55.8 322 25.2


User provided reference genes

Program Settings