Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 3481.4 1812 100.0
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2545.0 1818 72.7
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2525.0 1980 67.7
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2511.9 1811 72.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2504.9 1813 72.0
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2439.1 1809 70.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2436.0 1816 69.9
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2423.7 1814 69.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2418.3 1814 68.9
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2407.9 1816 69.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2394.0 1816 68.0
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2389.8 1814 68.5
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2377.4 1808 67.6
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2371.7 1816 68.1
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2367.4 1867 66.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2365.5 1803 68.6
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1813 68.0
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2360.5 1816 67.2
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2355.1 1836 66.9
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2348.2 1836 66.7
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2338.9 1803 67.6
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2338.9 1817 67.0
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2337.8 1813 66.7
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2335.5 1815 67.2
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2318.1 1814 66.6
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2308.5 1814 65.9
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2303.5 1817 65.8
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2299.2 1814 66.0
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2293.8 1823 65.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2293.8 1812 65.3
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2293.1 1812 65.4
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2291.2 1816 65.4
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2290.0 1803 65.3
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2286.9 1823 64.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2285.4 1813 64.8
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2285.4 1802 65.2
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2284.6 1812 65.8
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2279.6 1818 65.6
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2278.4 1847 65.8
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2269.2 1814 64.6
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2266.9 1808 65.6
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2265.0 2357 54.6
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2260.3 1812 65.4
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2260.0 1841 64.4
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2258.4 1803 65.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2256.5 1809 64.8
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2255.3 1844 64.4
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2253.4 1816 64.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2252.2 1812 65.2
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2251.1 1812 64.4
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2249.6 1816 64.3
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2249.6 1830 65.0
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2247.2 1824 64.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2246.5 1819 64.9
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2242.6 1804 64.6
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2242.2 1814 64.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2241.1 1810 64.3
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2239.2 1816 64.0
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2238.4 1809 65.1
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2238.0 1822 63.9
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2235.7 1801 64.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2234.1 1814 64.4
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2230.7 1807 64.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2229.9 1822 63.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2229.1 1814 64.2
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2228.8 1810 63.8
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2227.6 1802 63.7
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2217.2 1812 64.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2186.8 1810 63.3
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2173.3 1829 62.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2170.2 1820 62.5
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2153.3 1795 63.8
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2149.4 1893 61.0
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2147.1 1837 61.8
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2073.5 1821 60.2
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1973.4 1804 57.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1950.3 1483 68.0
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1922.5 1500 66.1
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1870.5 1392 69.5
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1822.0 1333 69.8
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1810.8 1316 70.7
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1773.1 1392 66.8
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1724.9 1302 68.8
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1658.7 1150 75.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1620.1 1349 64.7
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1613.6 1877 47.1
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1582.8 1232 67.6
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1580.8 1340 63.8
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1546.9 1826 49.1
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1503.8 1866 45.6
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1477.2 1879 44.2
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1410.6 1098 66.9
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1390.6 1656 46.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1338.6 1356 56.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1266.1 1115 58.5
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1151.7 1052 58.7
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1090.9 904 61.6
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.1e-281 973.0 886 57.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.6e-277 960.7 1729 35.6
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.6e-253 880.9 1739 34.6
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 3.0e-239 833.6 1774 32.5
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.3e-221 775.0 637 65.6
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.5e-217 759.6 790 51.6
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.3e-207 727.6 600 62.8
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 8.5e-194 682.6 509 69.2
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.0e-171 608.2 666 50.2
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.6e-168 597.4 2024 27.2
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.3e-165 589.0 457 65.6
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 8.0e-160 569.7 452 65.3
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 4.6e-155 553.9 451 64.1
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.6e-144 518.8 457 63.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 8.9e-143 513.1 502 53.4
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.4e-142 511.1 347 74.6
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-134 486.1 314 74.5
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.6e-112 411.4 372 60.2
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 2.0e-110 405.6 1468 25.3
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 8.7e-106 390.2 822 34.2
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.5e-89 336.3 290 58.3
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 5.7e-89 334.3 297 58.2
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 8.2e-88 330.5 287 58.5
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.5e-76 291.2 161 85.7
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.1e-65 256.9 194 68.0
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 5.7e-65 254.6 340 45.3
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.2e-61 242.7 281 47.3
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.1e-55 223.8 336 37.2
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 4.2e-52 211.8 198 57.6
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-51 210.3 204 52.9
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.8e-50 206.5 162 61.1
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.2e-46 193.7 338 40.2
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.9e-46 191.4 172 62.2
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 4.7e-43 181.8 129 69.0
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.1e-43 181.4 147 63.3
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 8.0e-43 181.0 286 40.6
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 2.0e-41 176.4 146 64.4
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.7e-40 173.3 183 54.1
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 2.9e-40 172.6 183 54.1
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 1.8e-34 153.3 167 54.5
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 1.2e-33 150.6 175 44.0
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.8e-33 148.3 211 41.2
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 8.6e-29 134.4 166 48.2
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 4.7e-27 128.6 146 53.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 1.1e-26 127.5 84 71.4
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-26 127.1 258 34.1
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.3e-24 120.6 73 76.7
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 1.9e-23 116.7 78 73.1
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.6e-22 113.6 172 37.2
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.2e-19 101.7 81 63.0
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-18 100.9 129 45.0
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.5e-17 97.1 84 52.4
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.4e-17 95.5 201 29.9
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 1.1e-15 90.9 92 52.2
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.6e-14 87.0 158 35.4
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.7e-14 86.3 80 58.8
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 1.0e-13 84.3 70 61.4
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 9.6e-12 77.8 63 65.1
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 6.2e-11 75.1 55 58.2
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 2.6e-09 69.7 76 53.9
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 7.6e-09 68.2 118 33.9
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-06 60.8 111 39.6
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 2.1e-06 60.1 76 42.1


User provided reference genes

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