Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.7e-49 199.1 109 100.0
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.0e-21 105.9 107 58.9
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 6.3e-20 100.9 108 63.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.3e-20 100.9 115 57.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.3e-20 100.5 112 58.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.4e-19 99.8 107 56.1
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 5.4e-19 97.8 111 58.6
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 9.2e-19 97.1 106 60.4
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.0e-18 95.9 110 57.3
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.8e-18 94.0 112 51.8
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.0e-17 93.6 112 55.4
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-17 93.6 111 55.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.7e-17 92.8 115 54.8
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.7e-17 92.8 108 55.6
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 58.3
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 3.8e-17 91.7 110 55.5
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.1e-16 90.1 111 55.0
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.9e-16 89.4 112 51.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.9e-16 89.4 110 53.6
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.9e-16 89.4 113 54.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 111 52.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-16 89.4 111 52.3
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.9e-16 89.4 110 52.7
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.9e-16 89.4 117 53.8
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.5e-16 89.0 109 57.8
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.5e-16 89.0 109 54.1
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 5.6e-16 87.8 113 55.8
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 5.6e-16 87.8 110 55.5
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 7.3e-16 87.4 110 50.0
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 7.3e-16 87.4 115 51.3
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 7.3e-16 87.4 113 53.1
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 9.5e-16 87.0 112 50.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 9.5e-16 87.0 117 55.6
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.6e-15 86.3 107 53.3
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 53.7
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.8e-15 85.5 108 50.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.8e-15 85.5 108 50.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.8e-15 85.5 108 50.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 2.8e-15 85.5 111 51.4
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.8e-15 85.5 96 54.2
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.6e-15 85.1 107 54.2
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.6e-15 85.1 110 52.7
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.6e-15 85.1 108 52.8
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.6e-15 85.1 111 52.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 6.1e-15 84.3 111 46.8
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 8.0e-15 84.0 107 53.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.0e-14 83.6 111 50.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.8e-14 82.8 107 52.3
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.8e-14 82.8 113 53.1
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.8e-14 82.8 116 47.4
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.8e-14 82.8 109 51.4
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.3e-14 82.4 107 52.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.3e-14 82.4 118 47.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.0e-14 82.0 111 50.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.0e-14 82.0 113 48.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-14 81.6 108 51.9
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-14 81.6 108 50.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-14 81.6 108 51.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.0e-14 81.6 108 51.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.0e-14 81.6 111 50.5
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.8e-14 80.9 110 50.0
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 6.8e-14 80.9 112 50.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 8.9e-14 80.5 108 50.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 8.9e-14 80.5 109 49.5
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 8.9e-14 80.5 111 48.6
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.9e-14 80.5 108 51.9
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.2e-13 80.1 107 49.5
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-13 80.1 109 53.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.5e-13 79.7 115 50.4
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 110 51.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.5e-13 79.7 111 51.4
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.5e-13 79.7 115 48.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.0e-13 79.3 109 49.5
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 2.6e-13 79.0 120 47.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 3.4e-13 78.6 109 53.2
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.4e-13 78.6 112 52.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.4e-13 78.2 112 47.3
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.4e-13 78.2 106 49.1
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.8e-13 77.8 108 42.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 7.5e-13 77.4 110 49.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 7.5e-13 77.4 110 49.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.5e-13 77.4 108 48.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.5e-13 77.4 108 48.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.5e-13 77.4 112 52.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 7.5e-13 77.4 107 47.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.8e-13 77.0 111 50.5
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.7e-12 76.3 109 50.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.7e-12 76.3 111 50.5
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.7e-12 76.3 111 50.5
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.9e-12 75.5 112 51.8
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 48.6
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.7e-12 75.1 107 46.7
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 3.7e-12 75.1 109 46.8
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 8.3e-12 73.9 107 49.5
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 8.3e-12 73.9 107 45.8
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.1e-11 73.6 112 49.1
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 113 46.0
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-11 73.2 112 50.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.9e-11 72.8 109 49.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.9e-11 72.8 112 49.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-11 72.8 110 49.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.9e-11 72.8 108 48.1
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.9e-11 72.8 112 51.8
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.0e-11 70.9 105 49.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 7.0e-11 70.9 111 47.7
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 9.2e-11 70.5 110 47.3
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 9.2e-11 70.5 113 46.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.7e-10 68.9 115 43.5
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.5e-10 68.6 105 44.8
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.5e-10 68.6 109 42.2
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.0e-10 67.8 78 55.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.8e-10 67.4 113 46.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.0e-09 67.0 113 46.0
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.0e-09 67.0 113 46.0
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.3e-09 66.6 110 42.7
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 96 55.2
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 110 42.7
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 3.0e-09 65.5 109 44.0
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.0e-09 65.5 113 45.1
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.9e-09 65.1 111 45.0
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 3.9e-09 65.1 105 45.7
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 5.0e-09 64.7 109 45.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 5.0e-09 64.7 113 43.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 6.6e-09 64.3 109 45.9
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.6e-08 61.2 116 44.8
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 9.5e-08 60.5 116 41.4
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.5e-08 60.5 39 74.4
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 94 45.7
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.2e-07 60.1 110 43.6
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.6e-07 59.7 107 45.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 115 40.0
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.6e-07 59.7 115 39.1
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 115 40.9
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.8e-07 58.9 112 43.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 2.8e-07 58.9 39 79.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 8.0e-07 57.4 110 43.6
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 8.0e-07 57.4 111 41.4
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.0e-07 57.4 118 40.7
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 8.0e-07 57.4 118 40.7
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-06 57.0 40 72.5
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 1.1e-06 57.0 41 75.6
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.4e-06 56.6 114 40.4
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.4e-06 56.6 115 39.1
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 2.3e-06 55.8 120 41.7
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 6.8e-06 54.3 118 37.3
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 8.9e-06 53.9 105 43.8


User provided reference genes

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