Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 7.9e-66 253.8 147 100.0
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 4.7e-10 68.6 61 54.1
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.0e-09 67.4 55 60.0
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 1.4e-09 67.0 55 54.5
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.3e-09 66.2 56 55.4
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.1e-09 65.9 53 56.6
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 5.2e-09 65.1 55 56.4
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 5.2e-09 65.1 56 55.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.2e-09 65.1 53 60.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 6.8e-09 64.7 55 56.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.2e-08 63.9 55 56.4
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.2e-08 63.9 55 56.4
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.5e-08 63.5 53 56.6
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.5e-08 63.5 55 56.4
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.5e-08 63.5 56 55.4
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.5e-08 63.5 59 54.2
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.5e-08 63.5 130 33.8
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.0e-08 63.2 55 54.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.0e-08 63.2 60 55.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.0e-08 63.2 53 58.5
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.0e-08 63.2 55 54.5
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.0e-08 63.2 53 56.6
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.0e-08 63.2 55 56.4
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.0e-08 63.2 55 56.4
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.0e-08 63.2 55 54.5
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 2.6e-08 62.8 55 58.2
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 2.6e-08 62.8 55 58.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 2.6e-08 62.8 55 58.2
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.6e-08 62.8 53 56.6
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.6e-08 62.8 53 58.5
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 2.6e-08 62.8 53 56.6
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.6e-08 62.8 55 54.5
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 3.4e-08 62.4 59 52.5
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 3.4e-08 62.4 53 56.6
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.4e-08 62.4 53 58.5
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.4e-08 62.4 60 53.3
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 3.4e-08 62.4 55 56.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 3.4e-08 62.4 59 49.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.4e-08 62.0 54 57.4
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 4.4e-08 62.0 53 52.8
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.4e-08 62.0 152 32.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 4.4e-08 62.0 53 54.7
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 5.8e-08 61.6 55 56.4
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 5.8e-08 61.6 60 48.3
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 7.5e-08 61.2 53 52.8
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 7.5e-08 61.2 53 56.6
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.8e-08 60.8 53 52.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.8e-08 60.8 53 52.8
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 9.8e-08 60.8 53 52.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-07 60.5 55 52.7
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.3e-07 60.5 53 56.6
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-07 60.5 54 57.4
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-07 60.5 53 52.8
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.7e-07 60.1 123 37.4
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.7e-07 60.1 146 31.5
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.7e-07 60.1 55 54.5
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.7e-07 60.1 53 54.7
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.2e-07 59.7 58 53.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 2.9e-07 59.3 59 50.8
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 2.9e-07 59.3 59 50.8
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 2.9e-07 59.3 59 50.8
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 2.9e-07 59.3 59 50.8
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 3.7e-07 58.9 55 52.7
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.7e-07 58.9 59 52.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.7e-07 58.9 126 35.7
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 3.7e-07 58.9 53 50.9
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.9e-07 58.5 54 51.9
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 4.9e-07 58.5 53 52.8
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.4e-07 58.2 54 51.9
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 6.4e-07 58.2 53 54.7
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 6.4e-07 58.2 54 51.9
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.4e-07 58.2 129 35.7
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 6.4e-07 58.2 59 45.8
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 6.4e-07 58.2 140 32.9
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 6.4e-07 58.2 134 35.1
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 6.4e-07 58.2 54 55.6
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.4e-07 58.2 53 56.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 8.3e-07 57.8 55 54.5
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 8.3e-07 57.8 55 54.5
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.3e-07 57.8 148 44.6
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-06 57.4 54 51.9
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.1e-06 57.4 53 54.7
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-06 57.4 53 52.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-06 57.4 53 52.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.1e-06 57.4 53 52.8
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-06 57.4 54 50.0
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-06 57.4 141 33.3
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.1e-06 57.4 58 51.7
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-06 57.4 53 52.8
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.4e-06 57.0 54 50.0
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.4e-06 57.0 53 50.9
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.4e-06 57.0 53 52.8
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.4e-06 57.0 57 47.4
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 1.9e-06 56.6 54 55.6
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 1.9e-06 56.6 54 55.6
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-06 56.6 54 51.9
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.9e-06 56.6 54 50.0
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.9e-06 56.6 53 52.8
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.9e-06 56.6 54 53.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.9e-06 56.6 53 52.8
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.9e-06 56.6 53 52.8
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.9e-06 56.6 53 52.8
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.9e-06 56.6 53 50.9
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.4e-06 56.2 54 50.0
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.4e-06 56.2 53 52.8
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-06 56.2 142 33.1
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.2e-06 55.8 121 33.9
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.2e-06 55.8 62 45.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.2e-06 55.8 54 48.1
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 3.2e-06 55.8 54 51.9
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.2e-06 55.8 62 45.2
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.2e-06 55.8 62 45.2
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 3.2e-06 55.8 54 48.1
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 3.2e-06 55.8 54 51.9
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.2e-06 55.8 53 50.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.2e-06 55.8 133 35.3
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 4.1e-06 55.5 59 47.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 4.1e-06 55.5 54 48.1
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 5.4e-06 55.1 54 51.9
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 5.4e-06 55.1 54 51.9
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 5.4e-06 55.1 54 51.9
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 5.4e-06 55.1 117 45.3
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.4e-06 55.1 59 49.2
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 5.4e-06 55.1 58 51.7
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 7.0e-06 54.7 54 50.0
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.0e-06 54.7 54 48.1
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 7.0e-06 54.7 53 49.1
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 9.2e-06 54.3 54 50.0
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 9.2e-06 54.3 59 45.8
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.2e-06 54.3 53 47.2


User provided reference genes

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