Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.1e-78 295.0 149 100.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 9.5e-51 203.8 160 66.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.8e-50 202.2 164 67.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 4.7e-50 201.4 164 65.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 8.0e-50 200.7 164 65.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.4e-49 199.9 164 64.6
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.4e-49 199.9 164 66.5
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 3.1e-49 198.7 154 66.2
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.2e-49 198.0 164 64.6
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 5.2e-49 198.0 161 66.5
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 6.8e-49 197.6 164 64.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 7.5e-48 194.1 160 62.5
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.3e-47 193.4 157 61.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.7e-47 193.0 165 63.6
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.2e-47 192.6 164 64.0
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.9e-47 191.4 164 61.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.4e-47 191.0 165 63.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-46 190.3 164 62.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.1e-46 190.3 165 63.6
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.9e-46 189.5 149 64.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.4e-46 189.1 166 61.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.4e-46 188.0 165 61.8
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.4e-46 188.0 165 63.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.4e-46 188.0 164 62.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.0e-46 187.6 164 60.4
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.2e-46 187.2 160 59.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.6e-45 186.4 165 62.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.6e-45 186.4 164 62.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-45 186.0 165 62.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.0e-45 186.0 157 63.1
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.7e-45 185.7 157 64.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 6.0e-45 184.5 165 61.2
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.0e-44 183.7 167 59.3
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.3e-44 183.3 166 59.6
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.7e-44 183.0 165 61.2
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.3e-44 182.6 166 59.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.3e-44 182.6 166 59.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-44 181.8 149 63.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 6.6e-44 181.0 159 59.7
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 7.3e-43 177.6 169 59.2
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 7.3e-43 177.6 164 57.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.6e-42 176.4 167 59.3
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.8e-42 175.6 162 58.0
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.6e-42 175.3 156 60.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 4.7e-42 174.9 164 58.5
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.7e-42 174.9 160 58.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 8.1e-42 174.1 158 62.0
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.1e-42 174.1 153 62.1
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.1e-42 174.1 160 57.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.3e-41 172.6 160 60.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.0e-41 171.8 167 59.3
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.9e-41 170.6 161 55.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.2e-40 170.2 153 59.5
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.0e-40 169.5 153 60.1
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.0e-40 169.5 157 56.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.0e-40 169.5 162 57.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.0e-40 169.5 154 59.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.6e-40 169.1 159 58.5
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.6e-40 169.1 161 55.9
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.6e-40 169.1 161 57.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.4e-40 168.7 159 57.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.4e-40 168.7 160 58.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 9.9e-40 167.2 165 57.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-39 166.8 153 58.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.7e-39 166.4 154 57.8
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.7e-39 165.2 165 57.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 6.4e-39 164.5 161 55.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.4e-39 164.5 153 55.6
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-38 163.3 156 59.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.2e-38 162.2 154 57.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.4e-38 161.4 149 59.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.4e-38 161.4 170 56.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.4e-38 161.4 162 56.2
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.4e-38 161.4 157 56.1
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 7.1e-38 161.0 152 60.5
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 9.2e-38 160.6 160 60.0
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-37 159.5 174 54.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.7e-37 159.1 160 55.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.5e-37 158.7 157 56.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-36 156.4 160 53.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.3e-36 156.0 161 54.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.9e-36 155.2 151 53.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.9e-36 155.2 147 58.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 5.1e-36 154.8 150 56.7
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 8.6e-36 154.1 150 56.7
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-35 153.7 160 53.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.5e-35 153.3 160 53.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-35 153.3 160 52.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.5e-35 153.3 148 55.4
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.3e-35 152.1 165 53.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.6e-35 151.4 160 54.4
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 7.3e-35 151.0 154 53.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-34 150.2 151 53.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.2e-34 150.2 153 57.5
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.1e-34 149.4 150 54.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.1e-34 149.4 150 58.7
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.1e-34 149.4 160 53.8
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-34 149.1 150 53.3
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.8e-34 149.1 150 53.3
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.8e-34 149.1 160 53.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.6e-34 148.7 150 53.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.7e-34 148.3 150 52.7
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.7e-34 148.3 150 55.3
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 6.2e-34 147.9 149 55.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 6.2e-34 147.9 168 50.6
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.2e-34 147.9 152 55.3
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.1e-33 147.1 149 54.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-33 147.1 156 57.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.4e-33 146.0 155 55.5
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.4e-33 146.0 155 55.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.1e-33 145.6 156 55.1
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.1e-33 145.6 153 54.9
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.1e-33 145.6 155 55.5
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.1e-33 145.6 146 50.7
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 5.2e-33 144.8 155 54.8
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.2e-33 144.8 169 51.5
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 5.8e-32 141.4 146 48.6
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.3e-31 140.2 136 60.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.8e-31 138.7 147 55.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 6.4e-31 137.9 155 51.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 8.4e-31 137.5 150 52.0
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 8.4e-31 137.5 105 63.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-30 136.3 147 51.7
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-30 136.3 147 51.7
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.4e-30 134.8 148 52.0
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 5.4e-30 134.8 154 53.2
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.1e-29 132.9 140 52.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.7e-29 132.5 160 48.1
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 7.8e-29 131.0 177 48.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 7.8e-29 131.0 160 50.0
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 7.8e-29 131.0 141 49.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.7e-28 129.8 142 52.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 8.7e-28 127.5 172 45.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.5e-27 125.9 155 49.7
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 5.6e-27 124.8 147 50.3
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 7.3e-27 124.4 181 45.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.3e-27 124.4 85 70.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 7.3e-27 124.4 82 69.5
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.8e-26 122.5 166 44.0
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.6e-26 122.1 157 48.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.1e-25 120.6 159 45.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.4e-25 119.4 159 44.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.1e-25 119.0 141 44.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.2e-25 118.2 159 43.4
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 9.0e-25 117.5 143 44.1
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-24 115.9 150 48.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.4e-24 115.2 160 45.6
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.3e-23 113.6 159 42.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.9e-23 111.7 81 59.3
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 8.4e-23 110.9 72 69.4
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.9e-22 109.8 161 42.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-22 109.4 141 44.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-22 109.4 159 42.8
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 3.2e-22 109.0 81 60.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-21 106.3 69 66.7
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.1e-21 106.3 100 56.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.5e-21 105.5 129 46.5
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.6e-21 105.1 119 47.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.0e-20 104.0 69 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.3e-20 102.8 172 42.4
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.0e-20 102.4 149 41.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.9e-19 99.8 71 63.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 7.3e-19 97.8 67 59.7
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.3e-19 97.8 69 60.9
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.1e-18 96.3 75 60.0
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-14 83.2 112 50.9
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 3.2e-14 82.4 45 75.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 9.3e-14 80.9 126 45.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-13 80.5 151 37.1
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.2e-13 80.5 151 37.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.8e-12 76.6 148 36.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-12 75.5 156 38.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 8.7e-12 74.3 53 64.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-09 67.4 77 49.4
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 9.0e-09 64.3 101 42.6
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 8.4e-07 57.8 121 37.2


User provided reference genes

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