Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 9.8e-124 446.8 227 100.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 6.6e-96 354.4 220 79.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 8.7e-96 354.0 220 80.0
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.1e-94 347.4 219 81.7
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.4e-93 346.7 225 77.3
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.1e-93 345.5 220 78.2
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 6.9e-93 344.4 225 76.0
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.9e-93 344.4 218 78.4
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.0e-92 342.8 220 79.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-91 340.1 225 75.6
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.2e-91 339.3 227 74.4
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 2.9e-91 339.0 227 74.0
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.8e-91 338.6 225 73.8
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.8e-91 338.6 225 73.3
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 8.4e-91 337.4 225 74.7
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-90 336.3 225 77.3
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.9e-90 336.3 229 72.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 4.2e-90 335.1 224 73.2
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 5.4e-90 334.7 230 73.0
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.4e-90 334.7 225 73.8
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 7.1e-90 334.3 227 75.3
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 9.3e-90 334.0 228 74.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.2e-89 333.6 227 74.0
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.6e-89 333.2 225 73.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.1e-89 332.8 225 73.8
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.7e-89 332.4 225 73.8
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.7e-89 332.4 227 75.8
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.5e-89 332.0 225 74.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 3.5e-89 332.0 225 73.3
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 4.6e-89 331.6 227 74.0
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.6e-89 331.6 237 68.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.6e-89 331.6 228 74.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.0e-89 331.3 225 73.8
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-88 330.5 225 72.9
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.3e-88 330.1 224 72.8
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.7e-88 329.7 227 74.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.7e-88 329.7 225 72.4
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.3e-88 329.3 225 75.1
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.3e-88 329.3 225 72.4
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.3e-88 329.3 225 72.4
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.3e-88 329.3 229 72.9
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 75.1
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.9e-88 328.6 229 71.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.9e-88 328.6 227 71.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.9e-88 328.6 223 72.6
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 5.1e-88 328.2 225 72.4
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 5.1e-88 328.2 224 75.9
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 76.0
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.1e-87 327.0 225 76.0
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.1e-87 327.0 226 70.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-87 326.6 226 70.4
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.5e-87 326.6 213 75.6
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.5e-87 326.6 226 69.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.9e-87 326.2 221 71.5
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.5e-87 325.9 221 71.0
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.5e-87 325.9 225 71.6
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.5e-87 325.9 227 73.6
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 71.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 69.3
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 4.3e-87 325.1 237 67.5
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 4.3e-87 325.1 237 67.5
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.6e-87 324.7 229 69.4
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 7.3e-87 324.3 222 72.5
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 9.6e-87 323.9 231 72.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.3e-86 323.6 229 70.3
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.6e-86 323.2 221 69.7
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.6e-86 323.2 231 67.5
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.1e-86 322.8 226 70.4
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.6e-86 322.0 221 73.8
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 6.2e-86 321.2 227 69.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.1e-86 320.9 226 69.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.1e-86 320.9 226 69.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.1e-85 320.5 224 72.8
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.8e-85 319.7 228 70.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.9e-85 317.8 227 67.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.5e-84 316.6 227 70.0
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-84 316.6 246 65.9
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.0e-84 316.2 227 69.6
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 4.5e-84 315.1 229 68.6
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.5e-84 315.1 222 72.5
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 5.8e-84 314.7 221 71.0
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 9.9e-84 313.9 221 70.1
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 9.9e-84 313.9 219 70.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 1.3e-83 313.5 215 69.8
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.2e-83 312.8 225 72.0
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.9e-83 312.4 222 71.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.1e-82 310.5 225 71.6
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.4e-82 310.1 220 70.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 4.2e-82 308.5 223 67.7
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.2e-81 307.0 226 68.6
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.6e-81 306.6 223 68.6
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.1e-81 306.2 225 71.1
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.7e-81 305.8 227 69.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 3.5e-81 305.4 221 68.8
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 6.0e-81 304.7 227 70.0
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.9e-81 304.3 226 67.3
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 5.1e-80 301.6 326 54.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 5.1e-80 301.6 228 68.4
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.7e-80 301.2 219 66.7
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 8.7e-80 300.8 222 66.7
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.9e-79 299.7 222 70.3
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.5e-79 299.3 219 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.8e-78 295.8 220 66.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.7e-78 295.4 227 68.7
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.1e-77 293.9 222 66.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 220 67.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.4e-77 293.5 226 65.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 5.3e-77 291.6 226 63.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 6.9e-77 291.2 221 66.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.5e-76 290.0 221 65.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 2.0e-76 289.7 308 52.9
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.8e-75 285.4 219 64.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.1e-73 279.6 219 62.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 2.7e-73 279.3 220 61.4
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.7e-73 279.3 221 62.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.5e-73 278.9 219 62.6
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 6.0e-73 278.1 357 46.2
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-71 273.9 220 62.7
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.9e-71 273.1 217 61.3
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.9e-71 273.1 220 58.6
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 4.1e-69 265.4 225 59.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 8.4e-67 257.7 179 73.7
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.6e-65 253.4 224 58.0
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.5e-63 246.9 153 76.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 7.7e-60 234.6 176 68.2
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.3e-59 233.8 152 73.7
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.4e-58 230.3 153 72.5
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 8.8e-56 221.1 152 70.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 2.0e-52 209.9 144 75.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.9e-51 206.1 165 63.0
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 8.5e-51 204.5 130 78.5
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.2e-50 202.6 122 81.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.6e-49 200.3 203 55.2
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.7e-46 189.1 107 82.2
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.2e-44 184.1 224 49.1
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 7.2e-42 174.9 111 74.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 7.2e-42 174.9 111 74.8
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.6e-39 166.4 99 77.8
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-38 164.1 118 72.0
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 7.7e-36 154.8 95 75.8
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 8.5e-35 151.4 121 65.3
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-34 150.2 119 70.6
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 9.4e-34 147.9 189 40.2
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.7e-33 146.4 120 64.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 4.0e-32 142.5 143 53.8
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.8e-30 136.3 88 73.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.7e-25 119.0 106 58.5
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.4e-21 107.5 81 66.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 9.1e-21 104.8 128 50.0
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 4.4e-15 85.9 55 72.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.6e-12 77.4 82 47.6
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.0e-12 77.0 47 76.6
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 2.3e-08 63.5 48 62.5


User provided reference genes

Program Settings