Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.8e-193 679.1 341 100.0
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 3.1e-113 412.5 332 65.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 4.6e-109 398.7 336 61.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.3e-108 396.4 331 62.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 2.5e-107 392.9 337 59.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.8e-106 389.4 321 62.3
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 3.1e-105 386.0 320 61.6
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.0e-105 385.6 329 61.1
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 6.9e-105 384.8 317 61.8
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.2e-104 384.0 317 61.5
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 3.4e-104 382.5 331 61.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 4.5e-104 382.1 331 61.0
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 9.9e-104 380.9 316 60.4
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 9.9e-104 380.9 335 57.9
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.7e-103 380.2 316 60.8
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.7e-103 380.2 336 59.2
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.9e-103 378.6 316 60.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 6.4e-103 378.3 335 60.0
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.1e-102 377.5 316 60.4
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.1e-102 377.5 316 60.4
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.4e-102 377.1 336 58.3
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.4e-102 377.1 332 59.0
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.9e-102 376.7 333 58.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.4e-102 376.3 331 58.9
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 3.2e-102 375.9 322 61.5
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.2e-102 375.9 322 61.5
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 5.5e-102 375.2 335 60.6
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 9.3e-102 374.4 331 59.2
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 9.3e-102 374.4 336 58.9
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-101 374.0 321 59.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 1.2e-101 374.0 321 59.8
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-101 374.0 331 58.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-101 372.5 335 60.0
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 3.5e-101 372.5 336 58.6
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.5e-101 372.5 316 59.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 7.9e-101 371.3 328 58.2
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-100 369.8 335 60.0
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.3e-100 369.8 336 58.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.9e-100 369.0 331 58.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 6.7e-100 368.2 319 59.6
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.1e-99 367.5 344 59.3
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.5e-99 367.1 336 57.7
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 7.4e-99 364.8 316 58.5
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 9.6e-99 364.4 321 57.9
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.3e-98 364.0 331 59.8
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.1e-98 363.2 325 59.7
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.2e-98 361.7 336 56.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.1e-98 361.3 337 56.4
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-97 359.4 325 58.8
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 4.0e-97 359.0 335 57.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.0e-97 359.0 330 56.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 3.4e-96 355.9 337 56.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.4e-96 355.9 338 57.1
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.7e-95 353.6 337 56.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.9e-95 352.8 328 57.9
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 3.8e-95 352.4 339 56.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 4.9e-95 352.1 335 57.0
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.4e-94 350.5 335 55.8
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.4e-94 350.5 338 57.1
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.9e-94 350.1 344 56.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.5e-94 348.6 319 57.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.2e-93 347.4 342 54.7
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.6e-93 347.1 321 54.2
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-93 347.1 339 56.0
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.1e-93 346.7 340 55.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 3.5e-93 345.9 335 56.1
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 7.9e-93 344.7 336 54.2
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.9e-92 342.4 343 55.1
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 5.1e-92 342.0 321 54.8
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.5e-91 340.5 321 54.5
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.9e-91 340.1 339 55.5
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 9.6e-91 337.8 335 53.1
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.1e-90 336.7 333 52.3
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.8e-90 336.3 321 54.2
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.8e-90 336.3 321 53.9
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 4.8e-90 335.5 339 54.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.8e-89 333.6 332 55.1
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.6e-88 329.7 386 50.0
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 4.2e-86 322.4 313 55.3
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.2e-85 320.9 340 51.2
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.2e-85 320.9 321 52.6
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 4.6e-85 318.9 344 52.9
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-83 314.3 270 60.4
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.9e-83 313.5 292 55.5
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.3e-83 312.8 336 50.3
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 5.7e-83 312.0 332 51.8
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.1e-81 307.8 331 50.8
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.8e-81 307.0 285 56.8
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.1e-81 306.2 288 56.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.0e-80 303.5 319 53.9
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.7e-79 300.4 337 50.4
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.1e-78 297.7 354 47.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-77 293.1 276 56.2
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.7e-77 293.1 336 50.3
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 4.6e-77 292.4 281 54.8
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.1e-77 292.0 336 46.4
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 7.9e-77 291.6 291 51.9
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.4e-75 285.8 276 54.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 4.1e-73 279.3 272 54.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 4.5e-72 275.8 333 47.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 5.9e-72 275.4 283 52.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-71 274.2 242 59.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 7.2e-70 268.5 281 53.0
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 7.9e-69 265.0 280 54.3
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-67 260.0 360 43.1
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.3e-67 259.6 283 51.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.0e-63 245.7 339 47.8
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.6e-61 240.7 274 47.1
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.1e-61 240.4 316 42.4
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.7e-60 235.3 209 60.3
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-58 231.1 170 64.7
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.4e-57 226.9 331 41.4
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 7.0e-57 225.3 199 54.8
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.7e-56 221.9 218 54.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-54 216.5 191 55.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.7e-53 212.6 320 40.3
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.8e-52 208.8 192 57.3
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.5e-51 205.3 334 41.9
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-50 203.0 275 44.7
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.8e-50 202.6 309 42.1
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-49 199.1 267 48.7
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 4.2e-46 189.5 158 57.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.8e-44 184.1 322 39.4
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-44 182.2 206 54.9
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 4.1e-41 172.9 196 46.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 5.4e-41 172.6 120 69.2
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-36 157.9 116 62.9
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.3e-36 157.1 139 58.3
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 3.0e-36 156.8 341 38.1
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-27 125.9 143 48.3
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 7.8e-24 115.5 100 61.0
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.0e-23 115.2 333 29.7
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.9e-23 113.2 147 42.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 3.6e-21 106.7 329 29.5
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.4e-20 104.8 106 49.1
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-17 94.4 64 57.8
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 4.1e-17 93.2 67 65.7
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.1e-15 86.3 324 25.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.5e-14 84.7 86 53.5
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-12 78.2 75 58.7
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.0e-12 76.6 79 46.8
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.9e-09 67.8 40 77.5
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.9e-09 67.8 67 49.3
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 3.2e-09 67.0 63 61.9
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-08 63.5 51 66.7


User provided reference genes

Program Settings